asd-1 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 R74.5 T45868_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
asd-1
M171_0.6		 Caenorhabditis elegans WGCAUGH RNAcompete
Ray et al.(2013)
RNCMPT00180 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M171_0.6 RRM 102 170

RNA Binding Domains

Protein ID Domain From To Sequence
R74.5a RRM 102 170
R74.5b.1 RRM 1 52
R74.5b.2 RRM 1 52
R74.5b.3 RRM 1 52
R74.5b.4 RRM 1 52
R74.5b.5 RRM 1 52

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CRE06934 Caenorhabditis remanei CRE06934 I 0.870
CBG20166 Caenorhabditis briggsae CBG20166 I 0.855
CBN09445 Caenorhabditis brenneri CBN09445 I 0.841
CJA17900 Caenorhabditis japonica CJA17900 I 0.826
CJA09998 Caenorhabditis japonica CJA09998 I 0.739
CRE07377 Caenorhabditis remanei CRE07377 I 0.725
fox-1 Caenorhabditis elegans T07D1.4 D 0.725
CBN11651 Caenorhabditis brenneri CBN11651 I 0.725
CBG02108 Caenorhabditis briggsae CBG02108 I 0.725
Bm1_08900 Brugia malayi Bm1_08900 I 0.710
LOAG_04679 Loa loa LOAG_04679 I 0.710
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.710