CJA09998 (Caenorhabditis japonica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CJA09998 T34134_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.971
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.768
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.768
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.768
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.754
asd-1
M171_0.6 		Caenorhabditis elegans WGCAUGH RNAcompete
Ray et al.(2013)
RNCMPT00180 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CJA09998 RRM 162 230

Links

Other RRM family RBPs
Other Caenorhabditis japonica RBPs

146 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBG02108 Caenorhabditis briggsae CBG02108 I 0.971
CRE07377 Caenorhabditis remanei CRE07377 I 0.971
fox-1 Caenorhabditis elegans T07D1.4 D 0.971
CBN11651 Caenorhabditis brenneri CBN11651 I 0.957
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.870
LOAG_04679 Loa loa LOAG_04679 I 0.870
Bm1_08900 Brugia malayi Bm1_08900 I 0.870
PHUM098700 Pediculus humanus PHUM098700 I 0.783
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.783
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.783
CJA17900 Caenorhabditis japonica CJA17900 I 0.783
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.768
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.768
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.768
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.768
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.768
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.768
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.768
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.768
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.768
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.768
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.768
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.768
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.768
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.768
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.768
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.768
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.768
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.768
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.768
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.768
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.768
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.768
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.768
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.768
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.768
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.768
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.768
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.768
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.768
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.768
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.768
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.768
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.768
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.768
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.768
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.768
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.768
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.768
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.768
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.768
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.768
AGAP006089 Anopheles gambiae AGAP006089 I 0.768
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.768
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.768
LOC100069362 Equus caballus ENSECAG00000018923 I 0.768
LOC100066233 Equus caballus ENSECAG00000012667 I 0.768
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.768
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.768
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.768
CBN09445 Caenorhabditis brenneri CBN09445 I 0.768
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.768
CRE06934 Caenorhabditis remanei CRE06934 I 0.768
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.768
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.768
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.768
CBG20166 Caenorhabditis briggsae CBG20166 I 0.768
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.768
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.768
a2bp1 Danio rerio ENSDARG00000014746 D 0.768
RBM9 Gallus gallus ENSGALG00000012540 I 0.768
A2BP1 Gallus gallus ENSGALG00000007366 I 0.768
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.768
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.768
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.768
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.768
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.768
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.768
A2BP1 Homo sapiens ENSG00000078328 D 0.768
RBFOX2 Homo sapiens ENSG00000100320 I 0.768
GK12272 Drosophila willistoni FBgn0214282 I 0.754
CAL91350 Xenopus laevis CAL91350 I 0.754
GE21749 Drosophila yakuba FBgn0238995 I 0.754
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.754
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.754
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.754
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.754
A4F5G6 Xenopus laevis A4F5G6 I 0.754
GJ13667 Drosophila virilis FBgn0200888 I 0.754
GM25214 Drosophila sechellia FBgn0180074 I 0.754
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.754
a2bp1 Drosophila melanogaster FBgn0052062 D 0.754
FP236187.1 Danio rerio ENSDARG00000010083 I 0.754
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.754
GI11474 Drosophila mojavensis FBgn0134235 I 0.754
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.754
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.754
GH14949 Drosophila grimshawi FBgn0122424 I 0.754
AAEL017168 Aedes aegypti AAEL017168 I 0.754
CAL91351 Xenopus laevis CAL91351 I 0.754
GF10597 Drosophila ananassae FBgn0087638 I 0.754
GG15438 Drosophila erecta FBgn0107689 I 0.754
GD14245 Drosophila simulans FBgn0185930 I 0.754
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.754
AAI55921 Xenopus laevis AAI55921 I 0.739
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.739
asd-1 Caenorhabditis elegans R74.5 D 0.739
AAI69563 Xenopus laevis AAI69563 I 0.739
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.739
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.739
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.739
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.739
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.739
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.739
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.739
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.739
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.739
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.739
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.739
RBFOX3 Homo sapiens ENSG00000167281 I 0.739
RBFOX3 Equus caballus ENSECAG00000023811 I 0.739
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.739
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.739
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.739
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.739
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.739
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.739
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.739
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.739
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.739
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.739
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.739
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.739
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.739
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.739
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.739
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.739
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.739
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.725
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.725
rbfox1l Danio rerio ENSDARG00000021184 I 0.725
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.725
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.725
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.710
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.710
ISCW013123 Ixodes scapularis ISCW013123 I 0.710