CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM3
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000013718
T34714_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM3
M048_0.6
Homo sapiens
RADACKA
RNAcompete
Ray et al.(2013)
RNCMPT00050
0.887
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000013469
RRM
8
78
LFVGGLNFDTDEQGLEQHFSSFGPISEVVVIKDKETQRSRGFGFITFANPEHASDAMRAMNGESVDGRQIR
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
54 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM3
Felis catus
ENSFCAG00000002245
I
0.901
LOC100051736
Equus caballus
ENSECAG00000024257
I
0.901
Rbm3
Dipodomys ordii
ENSDORG00000000182
I
0.901
RBM3
Loxodonta africana
ENSLAFG00000007003
I
0.901
RBM3
Pteropus vampyrus
ENSPVAG00000015630
I
0.901
Ame_R005750
Ailuropoda melanoleuca
Ame_R005750
I
0.901
Rbm3
Rattus norvegicus
ENSRNOG00000005387
I
0.901
RBM3
Cavia porcellus
ENSCPOG00000003553
I
0.901
Rbm3
Mus musculus
ENSMUSG00000031167
I
0.901
RBM3
Tursiops truncatus
ENSTTRG00000008587
I
0.887
ENSOCUG00000002271
Oryctolagus cuniculus
ENSOCUG00000002271
I
0.887
XR_023694.1
Pan troglodytes
ENSPTRG00000021864
I
0.887
ENSPPYG00000020314
Pongo pygmaeus
ENSPPYG00000020314
I
0.887
RBM3
Homo sapiens
ENSG00000102317
D
0.887
RBM3
Gorilla gorilla
ENSGGOG00000005864
I
0.887
ENSCAFG00000015485
Canis familiaris
ENSCAFG00000015485
I
0.873
ENSCAFG00000023295
Canis familiaris
ENSCAFG00000023295
I
0.845
RBM3
Choloepus hoffmanni
ENSCHOG00000007642
I
0.845
XM_549003.1
Canis familiaris
ENSCAFG00000016002
I
0.831
XM_001098948.1
Macaca mulatta
ENSMMUG00000004439
I
0.817
Q3ZBA4_BOVIN
Bos taurus
ENSBTAG00000025848
I
0.803
ENSSSCG00000004800
Sus scrofa
ENSSSCG00000004800
I
0.789
ENSSSCG00000004801
Sus scrofa
ENSSSCG00000004801
I
0.789
CIRBP
Taeniopygia guttata
ENSTGUG00000000884
I
0.761
Ame_R011907
Ailuropoda melanoleuca
Ame_R011907
I
0.761
CIRBP
Pteropus vampyrus
ENSPVAG00000005629
I
0.761
CIRBP
Sus scrofa
ENSSSCG00000013427
I
0.761
CIRBP
Tursiops truncatus
ENSTTRG00000011049
I
0.761
Cirbp
Rattus norvegicus
ENSRNOG00000015999
I
0.761
Cirbp
Mus musculus
ENSMUSG00000045193
I
0.761
CIRBP
Canis familiaris
ENSCAFG00000019506
I
0.761
CIRBP
Loxodonta africana
ENSLAFG00000032156
I
0.761
CIRBP
Gorilla gorilla
ENSGGOG00000002338
I
0.761
CIRBP
Homo sapiens
ENSG00000099622
I
0.761
LOC100394350
Callithrix jacchus
ENSCJAG00000005504
I
0.761
CIRBP
Ornithorhynchus anatinus
ENSOANG00000012230
I
0.761
CIRBP
Meleagris gallopavo
ENSMGAG00000010253
I
0.761
Q3SZN4_BOVIN
Bos taurus
ENSBTAG00000007480
I
0.761
LOC706175
Macaca mulatta
ENSMMUG00000022101
I
0.761
CIRBP
Anolis carolinensis
ENSACAG00000000441
I
0.761
CIRBP
Felis catus
ENSFCAG00000013724
I
0.746
Q45KQ2_CHICK
Gallus gallus
ENSGALG00000012225
I
0.746
CIRBP
Monodelphis domestica
ENSMODG00000005290
I
0.746
Q9DED4
Xenopus laevis
Q9DED4
I
0.732
BAB19129
Xenopus laevis
BAB19129
I
0.732
AAH54250
Xenopus laevis
AAH54250
I
0.732
XR_020876.1
Pan troglodytes
ENSPTRG00000010192
I
0.732
CIRBP
Microcebus murinus
ENSMICG00000015962
I
0.732
CIRBP
Cavia porcellus
ENSCPOG00000019403
N
0.718
cirbp
Xenopus tropicalis
ENSXETG00000003281
I
0.718
AAG09816
Xenopus laevis
AAG09816
N
0.704
BAA31861
Xenopus laevis
BAA31861
N
0.704
O93235
Xenopus laevis
O93235
N
0.704
AAH41204
Xenopus laevis
AAH41204
N
0.704