CIRBP (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000013427 T41502_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM3
M048_0.6 		Homo sapiens RADACKA RNAcompete
Ray et al.(2013)
RNCMPT00050 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000014276 RRM 8 78

Links

Other RRM family RBPs
Other Sus scrofa RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CIRBP Anolis carolinensis ENSACAG00000000441 I 1.000
LOC100394350 Callithrix jacchus ENSCJAG00000005504 I 1.000
CIRBP Meleagris gallopavo ENSMGAG00000010253 I 1.000
CIRBP Homo sapiens ENSG00000099622 I 1.000
Q3SZN4_BOVIN Bos taurus ENSBTAG00000007480 I 1.000
CIRBP Canis familiaris ENSCAFG00000019506 I 1.000
CIRBP Ornithorhynchus anatinus ENSOANG00000012230 I 1.000
LOC706175 Macaca mulatta ENSMMUG00000022101 I 1.000
CIRBP Taeniopygia guttata ENSTGUG00000000884 I 1.000
CIRBP Loxodonta africana ENSLAFG00000032156 I 1.000
CIRBP Tursiops truncatus ENSTTRG00000011049 I 1.000
Ame_R011907 Ailuropoda melanoleuca Ame_R011907 I 1.000
CIRBP Pteropus vampyrus ENSPVAG00000005629 I 1.000
CIRBP Gorilla gorilla ENSGGOG00000002338 I 1.000
Cirbp Rattus norvegicus ENSRNOG00000015999 I 0.986
CIRBP Monodelphis domestica ENSMODG00000005290 I 0.986
Cirbp Mus musculus ENSMUSG00000045193 I 0.986
Q45KQ2_CHICK Gallus gallus ENSGALG00000012225 I 0.986
CIRBP Felis catus ENSFCAG00000013724 I 0.986
CIRBP Microcebus murinus ENSMICG00000015962 I 0.972
XR_020876.1 Pan troglodytes ENSPTRG00000010192 I 0.972
CIRBP Cavia porcellus ENSCPOG00000019403 N 0.944
AAH54250 Xenopus laevis AAH54250 I 0.915
Q9DED4 Xenopus laevis Q9DED4 I 0.915
BAB19129 Xenopus laevis BAB19129 I 0.915
AAG09816 Xenopus laevis AAG09816 N 0.859
cirbp Xenopus tropicalis ENSXETG00000003281 I 0.859
BAA31861 Xenopus laevis BAA31861 N 0.859
O93235 Xenopus laevis O93235 N 0.859
AAH41204 Xenopus laevis AAH41204 N 0.859
zgc:112425 Danio rerio ENSDARG00000042049 N 0.761
RBM3 Anolis carolinensis ENSACAG00000013718 I 0.761
cirbp Danio rerio ENSDARG00000013351 N 0.761
RBM3 Cavia porcellus ENSCPOG00000003553 I 0.746
RBM3 Pteropus vampyrus ENSPVAG00000015630 I 0.746
Rbm3 Rattus norvegicus ENSRNOG00000005387 I 0.746
Ame_R005750 Ailuropoda melanoleuca Ame_R005750 I 0.746
Rbm3 Mus musculus ENSMUSG00000031167 I 0.746
Rbm3 Dipodomys ordii ENSDORG00000000182 I 0.746
RBM3 Loxodonta africana ENSLAFG00000007003 I 0.746
LOC100051736 Equus caballus ENSECAG00000024257 I 0.746
RBM3 Felis catus ENSFCAG00000002245 I 0.746
RBM3 Tursiops truncatus ENSTTRG00000008587 I 0.732
RBM3 Gorilla gorilla ENSGGOG00000005864 I 0.732
XR_023694.1 Pan troglodytes ENSPTRG00000021864 I 0.732
ENSOCUG00000002271 Oryctolagus cuniculus ENSOCUG00000002271 I 0.732
ENSCAFG00000023295 Canis familiaris ENSCAFG00000023295 I 0.732
RBM3 Homo sapiens ENSG00000102317 D 0.732
XM_549003.1 Canis familiaris ENSCAFG00000016002 I 0.732
ENSPPYG00000020314 Pongo pygmaeus ENSPPYG00000020314 I 0.732
ENSCAFG00000015485 Canis familiaris ENSCAFG00000015485 I 0.718
RBM3 Choloepus hoffmanni ENSCHOG00000007642 I 0.704