cirbp (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000013351 T36070_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000096177 RRM 7 64
ENSDARP00000096178 RRM 7 77

Links

Other RRM family RBPs
Other Danio rerio RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CIRBP Cavia porcellus ENSCPOG00000019403 N 0.789
zgc:112425 Danio rerio ENSDARG00000042049 N 0.789
CIRBP Felis catus ENSFCAG00000013724 I 0.775
CIRBP Monodelphis domestica ENSMODG00000005290 I 0.775
CIRBP Tursiops truncatus ENSTTRG00000011049 I 0.761
Ame_R011907 Ailuropoda melanoleuca Ame_R011907 I 0.761
CIRBP Taeniopygia guttata ENSTGUG00000000884 I 0.761
CIRBP Tetraodon nigroviridis ENSTNIG00000000450 N 0.761
CIRBP Takifugu rubripes ENSTRUG00000010187 N 0.761
Q9DED4 Xenopus laevis Q9DED4 I 0.761
CIRBP Canis familiaris ENSCAFG00000019506 I 0.761
LOC100394350 Callithrix jacchus ENSCJAG00000005504 I 0.761
Q3SZN4_BOVIN Bos taurus ENSBTAG00000007480 I 0.761
CIRBP Anolis carolinensis ENSACAG00000000441 I 0.761
BAB19129 Xenopus laevis BAB19129 I 0.761
AAH54250 Xenopus laevis AAH54250 I 0.761
CIRBP Sus scrofa ENSSSCG00000013427 I 0.761
CIRBP Meleagris gallopavo ENSMGAG00000010253 I 0.761
CIRBP Loxodonta africana ENSLAFG00000032156 I 0.761
CIRBP Gorilla gorilla ENSGGOG00000002338 I 0.761
CIRBP Homo sapiens ENSG00000099622 I 0.761
CIRBP Microcebus murinus ENSMICG00000015962 I 0.761
LOC706175 Macaca mulatta ENSMMUG00000022101 I 0.761
CIRBP Ornithorhynchus anatinus ENSOANG00000012230 I 0.761
CIRBP Pteropus vampyrus ENSPVAG00000005629 I 0.761
Cirbp Mus musculus ENSMUSG00000045193 I 0.746
cirbp Xenopus tropicalis ENSXETG00000003281 I 0.746
Q45KQ2_CHICK Gallus gallus ENSGALG00000012225 I 0.746
Cirbp Rattus norvegicus ENSRNOG00000015999 I 0.746
CIRBP Oryzias latipes ENSORLG00000015433 N 0.732
ENSGACG00000015206 Gasterosteus aculeatus ENSGACG00000015206 N 0.732
XR_020876.1 Pan troglodytes ENSPTRG00000010192 I 0.732
O93235 Xenopus laevis O93235 N 0.718
AAG09816 Xenopus laevis AAG09816 N 0.718
AAH41204 Xenopus laevis AAH41204 N 0.718
BAA31861 Xenopus laevis BAA31861 N 0.718