CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SART3
(
Erinaceus europaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSEEUG00000002954
T36749_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SART3
M062_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00064
0.879
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000002722
RRM
708
778
VFVSNLPYSLAEPDAKLRPLFEACGEVAEIRPIFSNRGDFRGYCYVEFKEEKSALQALGLDRKVVEGRPMF
ENSEEUP00000002722
RRM
805
874
LFISGLPFSCTKEELEELCEVHGTVKDIRLVTNRAGKPKGLAYVEYESESQASQAVIKMDGTTIRENTIK
Links
Other
RRM
family RBPs
Other
Erinaceus europaeus
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R009455
Ailuropoda melanoleuca
Ame_R009455
I
0.901
SART3
Pteropus vampyrus
ENSPVAG00000007442
I
0.894
SART3
Oryctolagus cuniculus
ENSOCUG00000016285
I
0.894
SART3
Microcebus murinus
ENSMICG00000013052
I
0.894
SART3
Felis catus
ENSFCAG00000014041
I
0.894
SART3
Gorilla gorilla
ENSGGOG00000011562
I
0.887
SART3
Tupaia belangeri
ENSTBEG00000008888
I
0.887
SART3
Pan troglodytes
ENSPTRG00000005404
I
0.887
SART3
Canis familiaris
ENSCAFG00000011352
I
0.887
ENSPPYG00000004919
Pongo pygmaeus
ENSPPYG00000004919
I
0.887
SART3
Callithrix jacchus
ENSCJAG00000015330
I
0.887
SART3
Homo sapiens
ENSG00000075856
D
0.879
SART3
Macaca mulatta
ENSMMUG00000017124
I
0.879
SART3
Loxodonta africana
ENSLAFG00000007167
I
0.879
SART3
Cavia porcellus
ENSCPOG00000010969
I
0.872
Sart3
Rattus norvegicus
ENSRNOG00000000702
I
0.865
SART3
Echinops telfairi
ENSETEG00000011292
I
0.858
SART3
Procavia capensis
ENSPCAG00000007505
I
0.858
SART3
Macropus eugenii
ENSMEUG00000006799
I
0.858
SART3
Ochotona princeps
ENSOPRG00000015817
I
0.858
Sart3
Mus musculus
ENSMUSG00000018974
I
0.858
Q4KU45_HORSE
Equus caballus
ENSECAG00000000314
I
0.851
A7MB01_BOVIN
Bos taurus
ENSBTAG00000031846
I
0.851
SART3
Monodelphis domestica
ENSMODG00000002859
I
0.851
SART3
Sus scrofa
ENSSSCG00000009946
I
0.844
SART3
Ornithorhynchus anatinus
ENSOANG00000008794
I
0.837
SART3
Tursiops truncatus
ENSTTRG00000003993
I
0.837
SART3
Spermophilus tridecemlineatus
ENSSTOG00000002376
I
0.830
SART3
Meleagris gallopavo
ENSMGAG00000005746
I
0.794
LOC777582
Gallus gallus
ENSGALG00000004887
I
0.787
SART3
Otolemur garnettii
ENSOGAG00000000932
I
0.780
SART3
Taeniopygia guttata
ENSTGUG00000006905
I
0.766
SART3
Tarsius syrichta
ENSTSYG00000013923
I
0.730
SART3
Dasypus novemcinctus
ENSDNOG00000019498
I
0.716
SART3
Myotis lucifugus
ENSMLUG00000007906
I
0.702
SART3
Anolis carolinensis
ENSACAG00000001176
N
0.702