CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Sart3
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000000702
T40997_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SART3
M062_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00064
0.922
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000000891
RRM
704
774
VFVSNLPYSIEEPEVKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSAQQALDLDRKNVEGRPMF
ENSRNOP00000000891
RRM
801
870
LFISGLPFSCTKEELEGICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVLKMDGMTIKENVIK
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Sart3
Mus musculus
ENSMUSG00000018974
I
0.950
SART3
Pteropus vampyrus
ENSPVAG00000007442
I
0.936
SART3
Macaca mulatta
ENSMMUG00000017124
I
0.936
SART3
Oryctolagus cuniculus
ENSOCUG00000016285
I
0.929
SART3
Canis familiaris
ENSCAFG00000011352
I
0.929
Ame_R009455
Ailuropoda melanoleuca
Ame_R009455
I
0.929
ENSPPYG00000004919
Pongo pygmaeus
ENSPPYG00000004919
I
0.929
SART3
Gorilla gorilla
ENSGGOG00000011562
I
0.922
SART3
Pan troglodytes
ENSPTRG00000005404
I
0.922
SART3
Homo sapiens
ENSG00000075856
D
0.922
SART3
Loxodonta africana
ENSLAFG00000007167
I
0.915
SART3
Procavia capensis
ENSPCAG00000007505
I
0.915
SART3
Cavia porcellus
ENSCPOG00000010969
I
0.915
SART3
Callithrix jacchus
ENSCJAG00000015330
I
0.915
SART3
Tupaia belangeri
ENSTBEG00000008888
I
0.915
SART3
Felis catus
ENSFCAG00000014041
I
0.908
SART3
Microcebus murinus
ENSMICG00000013052
I
0.908
Q4KU45_HORSE
Equus caballus
ENSECAG00000000314
I
0.901
SART3
Sus scrofa
ENSSSCG00000009946
I
0.887
SART3
Macropus eugenii
ENSMEUG00000006799
I
0.879
SART3
Monodelphis domestica
ENSMODG00000002859
I
0.879
SART3
Spermophilus tridecemlineatus
ENSSTOG00000002376
I
0.879
SART3
Echinops telfairi
ENSETEG00000011292
I
0.872
SART3
Erinaceus europaeus
ENSEEUG00000002954
I
0.865
SART3
Tursiops truncatus
ENSTTRG00000003993
I
0.858
A7MB01_BOVIN
Bos taurus
ENSBTAG00000031846
I
0.858
SART3
Ornithorhynchus anatinus
ENSOANG00000008794
I
0.851
SART3
Ochotona princeps
ENSOPRG00000015817
I
0.844
LOC777582
Gallus gallus
ENSGALG00000004887
I
0.830
SART3
Meleagris gallopavo
ENSMGAG00000005746
I
0.830
SART3
Otolemur garnettii
ENSOGAG00000000932
I
0.823
SART3
Taeniopygia guttata
ENSTGUG00000006905
I
0.773
SART3
Tarsius syrichta
ENSTSYG00000013923
I
0.766
SART3
Dasypus novemcinctus
ENSDNOG00000019498
I
0.745
SART3
Myotis lucifugus
ENSMLUG00000007906
I
0.716