CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SART3
(
Echinops telfairi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSETEG00000011292
T36954_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SART3
M062_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00064
0.887
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000009159
RRM
550
620
VFVSNLPYSMSEPDTKLQPLFEACGEVAEIRPIFSNRGDFRGYCYVEFKDEKSALQALELDRRNVEGRPMF
ENSETEP00000009159
RRM
647
716
VFISGLPFSCTREELEELCQAHGTVKDLRLVTNRAGKPKGLAYVEFENESQASQAVLKMDGMTVKENVIK
Links
Other
RRM
family RBPs
Other
Echinops telfairi
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SART3
Microcebus murinus
ENSMICG00000013052
I
0.908
SART3
Loxodonta africana
ENSLAFG00000007167
I
0.908
SART3
Felis catus
ENSFCAG00000014041
I
0.908
SART3
Tupaia belangeri
ENSTBEG00000008888
I
0.901
SART3
Pteropus vampyrus
ENSPVAG00000007442
I
0.894
ENSPPYG00000004919
Pongo pygmaeus
ENSPPYG00000004919
I
0.887
SART3
Oryctolagus cuniculus
ENSOCUG00000016285
I
0.887
SART3
Macaca mulatta
ENSMMUG00000017124
I
0.887
Ame_R009455
Ailuropoda melanoleuca
Ame_R009455
I
0.887
SART3
Cavia porcellus
ENSCPOG00000010969
I
0.887
SART3
Procavia capensis
ENSPCAG00000007505
I
0.887
SART3
Canis familiaris
ENSCAFG00000011352
I
0.887
SART3
Homo sapiens
ENSG00000075856
D
0.887
SART3
Callithrix jacchus
ENSCJAG00000015330
I
0.879
SART3
Pan troglodytes
ENSPTRG00000005404
I
0.879
SART3
Gorilla gorilla
ENSGGOG00000011562
I
0.879
Sart3
Rattus norvegicus
ENSRNOG00000000702
I
0.872
SART3
Sus scrofa
ENSSSCG00000009946
I
0.858
SART3
Erinaceus europaeus
ENSEEUG00000002954
I
0.858
SART3
Ornithorhynchus anatinus
ENSOANG00000008794
I
0.851
SART3
Spermophilus tridecemlineatus
ENSSTOG00000002376
I
0.851
Sart3
Mus musculus
ENSMUSG00000018974
I
0.844
Q4KU45_HORSE
Equus caballus
ENSECAG00000000314
I
0.844
SART3
Macropus eugenii
ENSMEUG00000006799
I
0.837
SART3
Monodelphis domestica
ENSMODG00000002859
I
0.830
SART3
Ochotona princeps
ENSOPRG00000015817
I
0.830
SART3
Tursiops truncatus
ENSTTRG00000003993
I
0.823
A7MB01_BOVIN
Bos taurus
ENSBTAG00000031846
I
0.816
SART3
Otolemur garnettii
ENSOGAG00000000932
I
0.809
SART3
Meleagris gallopavo
ENSMGAG00000005746
I
0.809
LOC777582
Gallus gallus
ENSGALG00000004887
I
0.780
SART3
Dasypus novemcinctus
ENSDNOG00000019498
I
0.752
SART3
Tarsius syrichta
ENSTSYG00000013923
I
0.745
SART3
Taeniopygia guttata
ENSTGUG00000006905
I
0.738
SART3
Anolis carolinensis
ENSACAG00000001176
N
0.702