SYNCRIP (Erinaceus europaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSEEUG00000004542 T36762_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.745
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000004138 RRM 146 214
ENSEEUP00000004138 RRM 227 250
ENSEEUP00000004138 RRM 322 384

Links

Other RRM family RBPs
Other Erinaceus europaeus RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.807
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.807
SYNCRIP Homo sapiens ENSG00000135316 I 0.807
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.775
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.775
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.775
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.775
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.775
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.775
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.775
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.775
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.775
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.775
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.775
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.775
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.775
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.775
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.775
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.775
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.775
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.770
Syncrip Mus musculus ENSMUSG00000032423 I 0.770
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.770
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.770
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.770
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.765
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.765
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.750
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.745
AAH70529 Xenopus laevis AAH70529 I 0.735
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.700