Syncrip (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000000204 T40993_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.965
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.885
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.856
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000000222 RRM 164 232
ENSRNOP00000000222 RRM 245 312
ENSRNOP00000000222 RRM 340 402
ENSRNOP00000048433 RRM 74 142
ENSRNOP00000048433 RRM 155 222
ENSRNOP00000048433 RRM 250 312
ENSRNOP00000053645 RRM 164 232
ENSRNOP00000053645 RRM 245 312
ENSRNOP00000053645 RRM 340 402

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Syncrip Mus musculus ENSMUSG00000032423 I 1.000
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.995
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.995
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.995
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.995
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.995
SYNCRIP Homo sapiens ENSG00000135316 I 0.995
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.995
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.995
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.995
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.995
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.995
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.995
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.995
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.995
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.995
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.995
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.995
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.995
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.995
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.995
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.990
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.990
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.990
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.985
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.985
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.970
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.965
AAH70529 Xenopus laevis AAH70529 I 0.955
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.925
syncrip Danio rerio ENSDARG00000040184 I 0.915
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.906
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.906
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.905
syncripl Danio rerio ENSDARG00000026723 I 0.896
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.896
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.896
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.896
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.896
AAI61702 Xenopus laevis AAI61702 I 0.876
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.876
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.856
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.851
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.851
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.851
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.851
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.851
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.851
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.851
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.851
HNRNPR Equus caballus ENSECAG00000013733 I 0.851
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.851
HNRNPR Homo sapiens ENSG00000125944 I 0.851
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.851
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.851
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.847
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.847
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.847
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.847
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.844
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.844
LOC100070472 Equus caballus ENSECAG00000012464 I 0.840
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.839
HNRNPR Sorex araneus ENSSARG00000001732 I 0.839
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.839
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.839
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.839
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.830
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.824
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.820
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.820
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.814
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.813
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.810
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.806
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.804
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.785
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.780
SYNCRIP Erinaceus europaeus ENSEEUG00000004542 I 0.770
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.761
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.756
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.736
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.731
SYNCRIP Ochotona princeps ENSOPRG00000010624 I 0.730
ENSRNOG00000033356 Rattus norvegicus ENSRNOG00000033356 I 0.702