SYNCRIP (Anolis carolinensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSACAG00000015234 T34722_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.965
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.885
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.841
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000014993 RRM 164 232
ENSACAP00000014993 RRM 245 312
ENSACAP00000014993 RRM 340 402

Links

Other RRM family RBPs
Other Anolis carolinensis RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.980
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.980
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.975
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.975
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.975
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.975
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.975
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.975
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.975
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.975
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.975
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.975
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.975
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.975
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.975
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.975
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.975
SYNCRIP Homo sapiens ENSG00000135316 I 0.975
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.975
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.975
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.975
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.975
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.975
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.970
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.970
Syncrip Mus musculus ENSMUSG00000032423 I 0.970
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.970
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.965
AAH70529 Xenopus laevis AAH70529 I 0.955
syncrip Danio rerio ENSDARG00000040184 I 0.925
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.920
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.911
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.911
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.910
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.901
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.896
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.896
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.891
syncripl Danio rerio ENSDARG00000026723 I 0.881
AAI61702 Xenopus laevis AAI61702 I 0.876
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.876
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.842
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.837
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.837
HNRNPR Equus caballus ENSECAG00000013733 I 0.837
HNRNPR Homo sapiens ENSG00000125944 I 0.837
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.837
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.837
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.837
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.837
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.837
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.837
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.837
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.837
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.837
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.832
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.832
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.832
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.832
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.830
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.829
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.829
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.824
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.824
HNRNPR Sorex araneus ENSSARG00000001732 I 0.824
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.824
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.824
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.823
LOC100070472 Equus caballus ENSECAG00000012464 I 0.820
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.810
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.810
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.806
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.805
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.805
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.799
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.789
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.770
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.766
SYNCRIP Erinaceus europaeus ENSEEUG00000004542 I 0.750
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.746
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.742
SYNCRIP Ochotona princeps ENSOPRG00000010624 I 0.725
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.721
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.721