SYNCRIP (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000020109 T37026_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.965
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.890
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.851
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000016337 RRM 114 182
ENSETEP00000016337 RRM 195 262
ENSETEP00000016337 RRM 290 352

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.995
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.995
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.995
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.995
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.995
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.995
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.995
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.995
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.995
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.995
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.995
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.995
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.995
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.995
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.995
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.995
SYNCRIP Homo sapiens ENSG00000135316 I 0.995
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.995
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.995
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.995
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.990
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.990
Syncrip Mus musculus ENSMUSG00000032423 I 0.990
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.990
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.985
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.985
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.970
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.965
AAH70529 Xenopus laevis AAH70529 I 0.955
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.920
syncrip Danio rerio ENSDARG00000040184 I 0.920
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.911
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.901
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.901
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.901
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.901
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.900
syncripl Danio rerio ENSDARG00000026723 I 0.896
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.896
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.881
AAI61702 Xenopus laevis AAI61702 I 0.881
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.851
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.847
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.847
HNRNPR Equus caballus ENSECAG00000013733 I 0.847
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.847
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.847
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.847
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.847
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.847
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.847
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.847
HNRNPR Homo sapiens ENSG00000125944 I 0.847
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.847
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.847
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.842
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.842
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.842
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.842
LOC100070472 Equus caballus ENSECAG00000012464 I 0.840
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.839
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.839
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.834
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.834
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.834
HNRNPR Sorex araneus ENSSARG00000001732 I 0.834
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.834
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.830
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.820
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.820
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.820
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.813
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.810
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.809
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.806
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.799
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.790
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.776
SYNCRIP Erinaceus europaeus ENSEEUG00000004542 I 0.770
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.756
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.751
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.731
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.726
SYNCRIP Ochotona princeps ENSOPRG00000010624 I 0.725