ENSXETG00000018075 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000018075 T42914_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6		 Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.880
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.846
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M236_0.6 RRM 51 119
M236_0.6 RRM 132 199
M236_0.6 RRM 227 289

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000039218 RRM 168 236
ENSXETP00000039218 RRM 249 316
ENSXETP00000039218 RRM 344 406

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH70529 Xenopus laevis AAH70529 I 0.990
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.980
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.975
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.975
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.970
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.970
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.970
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.970
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.970
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.970
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.970
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.970
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.970
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.970
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.970
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.970
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.970
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.970
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.970
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.970
SYNCRIP Homo sapiens ENSG00000135316 I 0.970
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.970
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.970
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.970
Syncrip Mus musculus ENSMUSG00000032423 I 0.965
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.965
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.965
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.965
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.960
syncrip Danio rerio ENSDARG00000040184 I 0.930
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.920
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.915
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.901
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.901
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.901
syncripl Danio rerio ENSDARG00000026723 I 0.891
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.886
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.886
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.881
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.871
AAI61702 Xenopus laevis AAI61702 I 0.866
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.847
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.842
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.842
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.842
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.842
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.842
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.842
HNRNPR Equus caballus ENSECAG00000013733 I 0.842
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.842
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.842
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.842
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.842
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.842
HNRNPR Homo sapiens ENSG00000125944 I 0.842
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.837
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.837
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.837
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.837
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.834
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.834
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.829
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.829
HNRNPR Sorex araneus ENSSARG00000001732 I 0.829
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.829
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.829
LOC100070472 Equus caballus ENSECAG00000012464 I 0.820
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.820
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.815
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.810
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.806
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.805
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.805
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.804
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.803
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.789
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.770
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.766
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.746
SYNCRIP Erinaceus europaeus ENSEEUG00000004542 I 0.745
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.741
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.721
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.721
SYNCRIP Ochotona princeps ENSOPRG00000010624 I 0.720