CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSETEG00000002793
(
Echinops telfairi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSETEG00000002793
T36879_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000002286
RRM
36
104
IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF
ENSETEP00000002286
RRM
128
197
VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY
ENSETEP00000002286
RRM
231
265
LYVKNLDDGIDDERLRKEFSPFGTITSAKXXXXXX
Links
Other
RRM
family RBPs
Other
Echinops telfairi
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSSARG00000004448
Sorex araneus
ENSSARG00000004448
N
0.994
PABPC4
Felis catus
ENSFCAG00000015254
N
0.851
Q5ZL53_CHICK
Gallus gallus
ENSGALG00000014450
N
0.808
ENSMGAG00000012239
Meleagris gallopavo
ENSMGAG00000012239
N
0.804
ENSCPOG00000012917
Cavia porcellus
ENSCPOG00000012917
N
0.803
ENSVPAG00000003865
Vicugna pacos
ENSVPAG00000003865
N
0.803
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.803
ENSEEUG00000002701
Erinaceus europaeus
ENSEEUG00000002701
N
0.755
ENSDNOG00000008718
Dasypus novemcinctus
ENSDNOG00000008718
N
0.750