CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q5ZL53_CHICK
(
Gallus gallus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGALG00000014450
T37720_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000023288
RRM
37
105
IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF
ENSGALP00000023288
RRM
129
198
VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY
ENSGALP00000023288
RRM
232
300
LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY
Links
Other
RRM
family RBPs
Other
Gallus gallus
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSMGAG00000012239
Meleagris gallopavo
ENSMGAG00000012239
N
0.995
ENSCPOG00000012917
Cavia porcellus
ENSCPOG00000012917
N
0.995
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.995
ENSVPAG00000003865
Vicugna pacos
ENSVPAG00000003865
N
0.995
ENSEEUG00000002701
Erinaceus europaeus
ENSEEUG00000002701
N
0.947
ENSDNOG00000008718
Dasypus novemcinctus
ENSDNOG00000008718
N
0.942
ENSMGAG00000005408
Meleagris gallopavo
ENSMGAG00000005408
N
0.870
PABPC4
Pteropus vampyrus
ENSPVAG00000002187
N
0.865
Pabpc1
Dipodomys ordii
ENSDORG00000013935
N
0.861
PABPC4
Choloepus hoffmanni
ENSCHOG00000005327
N
0.856
PABPC4
Sorex araneus
ENSSARG00000000310
N
0.856
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.856
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.851
ENSETEG00000002793
Echinops telfairi
ENSETEG00000002793
N
0.808
ENSSARG00000004448
Sorex araneus
ENSSARG00000004448
N
0.803
ENSSTOG00000016395
Spermophilus tridecemlineatus
ENSSTOG00000016395
N
0.764