RBM42 (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000007878 T36922_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.817
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.775
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000006396 RRM 351 421

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM42 Sus scrofa ENSSSCG00000002905 I 0.817
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.817
RBM42 Sorex araneus ENSSARG00000010724 I 0.817
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.817
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.817
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.817
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.817
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.817
LOC100051102 Equus caballus ENSECAG00000018215 I 0.817
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.817
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.817
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.817
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.817
RBM42 Canis familiaris ENSCAFG00000006925 I 0.817
RBM42 Procavia capensis ENSPCAG00000013053 I 0.817
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.817
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.817
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.817
RBM42 Microcebus murinus ENSMICG00000009880 I 0.817
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.817
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.817
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.817
RBM42 Homo sapiens ENSG00000126254 D 0.817
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.817
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.817
Rbm42 Mus musculus ENSMUSG00000036733 I 0.817
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.817
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.789
rbm42 Danio rerio ENSDARG00000039910 I 0.775
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.775
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.775
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.775
RBM42 Oryzias latipes ENSORLG00000003387 I 0.775
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.775
AAI29698 Xenopus laevis AAI29698 I 0.761
A2VDB3 Xenopus laevis A2VDB3 I 0.761
RBM42 Loxodonta africana ENSLAFG00000014993 N 0.732
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.732
RBM42 Felis catus ENSFCAG00000006376 I 0.718
AAI29577 Xenopus laevis AAI29577 I 0.718