CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ZNF638
(
Echinops telfairi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSETEG00000013272
T36972_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZNF638
M155_0.6
Homo sapiens
BGUUSKU
RNAcompete
Ray et al.(2013)
RNCMPT00164
0.700
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000010761
RRM
483
545
VVVSDLPEDGCTEEDIRKVFQPLGKINEVLIVPYRKEAYLEMEFKESVTTVLKSVEKSPLMIK
ENSETEP00000010761
RRM
709
755
VLVSNLPLKGYSIEDIYNLAKPFGGLNDILLLSSHKKAYIEVSRKSG
Links
Other
RRM
family RBPs
Other
Echinops telfairi
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZNF638
Loxodonta africana
ENSLAFG00000008513
I
0.773
ZNF638
Dasypus novemcinctus
ENSDNOG00000002173
I
0.727
ZNF638
Canis familiaris
ENSCAFG00000009067
I
0.718
ZNF638
Pan troglodytes
ENSPTRG00000012048
I
0.709
ZNF638
Homo sapiens
ENSG00000075292
D
0.700