CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZNF638
(
Dasypus novemcinctus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDNOG00000002173
T36277_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZNF638
M155_0.6
Homo sapiens
BGUUSKU
RNAcompete
Ray et al.(2013)
RNCMPT00164
0.852
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDNOP00000001692
RRM
668
727
LLLSELPEDGCTEDDVRKVFQPFGKVSDILIVPYRKEAYLEMEFKEAITAVMKYVETTPL
ENSDNOP00000001692
RRM
897
943
VLVSNLPNKGYSVEEIYNLAKPFGGLKDILILSSHKKAFMEISRKSA
Links
Other
RRM
family RBPs
Other
Dasypus novemcinctus
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZNF638
Pan troglodytes
ENSPTRG00000012048
I
0.861
ZNF638
Gorilla gorilla
ENSGGOG00000012511
I
0.853
ZNF638
Homo sapiens
ENSG00000075292
D
0.852
ZNF638
Canis familiaris
ENSCAFG00000009067
I
0.852
ZNF638
Vicugna pacos
ENSVPAG00000004117
I
0.835
ZNF638
Oryctolagus cuniculus
ENSOCUG00000010045
I
0.826
ZNF638
Tursiops truncatus
ENSTTRG00000014220
I
0.823
ZNF638
Loxodonta africana
ENSLAFG00000008513
I
0.822
Ame_R002690
Ailuropoda melanoleuca
Ame_R002690
I
0.813
ZNF638
Equus caballus
ENSECAG00000007715
I
0.811
ZNF638
Tarsius syrichta
ENSTSYG00000012849
I
0.807
Zfml
Dipodomys ordii
ENSDORG00000007360
I
0.807
ZNF638
Macaca mulatta
ENSMMUG00000007175
I
0.805
ZNF638
Bos taurus
ENSBTAG00000009242
I
0.777
ZNF638
Sorex araneus
ENSSARG00000000956
I
0.776
ZNF638
Pteropus vampyrus
ENSPVAG00000008368
I
0.757
ZNF638
Callithrix jacchus
ENSCJAG00000019436
I
0.754
ZNF638
Echinops telfairi
ENSETEG00000013272
I
0.727
Zfml
Rattus norvegicus
ENSRNOG00000014501
I
0.721
ZNF638
Cavia porcellus
ENSCPOG00000010101
I
0.718
ZNF638
Monodelphis domestica
ENSMODG00000010964
N
0.711