CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZNF638
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000009067
T35072_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZNF638
M155_0.6
Homo sapiens
BGUUSKU
RNAcompete
Ray et al.(2013)
RNCMPT00164
0.843
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000013347
RRM
675
735
LLVSELPEDGCTEEDIRKIFQPFGKVNDVLIVPYRKEAYLEMEFREAVTAVMKYIETTPLQ
ENSCAFP00000013347
RRM
903
949
VLISNLPNKGYSIEEVYNLVKPFGGLKDILILSSHKKVFMEINRKSA
ENSCAFP00000013355
RRM
675
735
LLVSELPEDGCTEEDIRKIFQPFGKVNDVLIVPYRKEAYLEMEFREAVTAVMKYIETTPLQ
ENSCAFP00000013355
RRM
850
887
VLISNLPNKGYSIEEVYNLVKPFGGLKDILILSSHKKV
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R002690
Ailuropoda melanoleuca
Ame_R002690
I
0.926
ZNF638
Equus caballus
ENSECAG00000007715
I
0.910
ZNF638
Tursiops truncatus
ENSTTRG00000014220
I
0.894
ZNF638
Vicugna pacos
ENSVPAG00000004117
I
0.855
ZNF638
Pan troglodytes
ENSPTRG00000012048
I
0.852
ZNF638
Dasypus novemcinctus
ENSDNOG00000002173
I
0.852
ZNF638
Sorex araneus
ENSSARG00000000956
I
0.851
ZNF638
Homo sapiens
ENSG00000075292
D
0.843
ZNF638
Pteropus vampyrus
ENSPVAG00000008368
I
0.843
ZNF638
Tarsius syrichta
ENSTSYG00000012849
I
0.836
ZNF638
Oryctolagus cuniculus
ENSOCUG00000010045
I
0.836
ZNF638
Gorilla gorilla
ENSGGOG00000012511
I
0.835
ZNF638
Macaca mulatta
ENSMMUG00000007175
I
0.832
ZNF638
Bos taurus
ENSBTAG00000009242
I
0.823
Zfml
Dipodomys ordii
ENSDORG00000007360
I
0.818
ZNF638
Loxodonta africana
ENSLAFG00000008513
I
0.796
ZNF638
Callithrix jacchus
ENSCJAG00000019436
I
0.789
ZNF638
Monodelphis domestica
ENSMODG00000010964
N
0.746
Zfml
Rattus norvegicus
ENSRNOG00000014501
I
0.741
Zfml
Mus musculus
ENSMUSG00000030016
N
0.723
ZNF638
Cavia porcellus
ENSCPOG00000010101
I
0.721
ZNF638
Macropus eugenii
ENSMEUG00000008620
N
0.719
ZNF638
Echinops telfairi
ENSETEG00000013272
I
0.718