CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZNF638
(
Homo sapiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSG00000075292
T37173_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZNF638
M155_0.6
Homo sapiens
BGUUSKU
RNAcompete
Ray et al.(2013)
RNCMPT00164
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M155_0.6
RRM
51
110
LLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPL
M155_0.6
RRM
280
326
MLVSNLPNKGYSVEEVYDLAKPFGGLKDILILSSHKKAYIEINRKAA
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000264447
RRM
678
737
LLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPL
ENSP00000264447
RRM
907
953
MLVSNLPNKGYSVEEVYDLAKPFGGLKDILILSSHKKAYIEINRKAA
ENSP00000348066
RRM
678
737
LLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPL
ENSP00000348066
RRM
907
953
MLVSNLPNKGYSVEEVYDLAKPFGGLKDILILSSHKKAYIEINRKAA
ENSP00000367033
RRM
678
737
LLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPL
ENSP00000377694
RRM
678
737
LLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPL
ENSP00000377694
RRM
907
953
MLVSNLPNKGYSVEEVYDLAKPFGGLKDILILSSHKKAYIEINRKAA
ENSP00000386433
RRM
678
737
LLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPL
ENSP00000386433
RRM
907
953
MLVSNLPNKGYSVEEVYDLAKPFGGLKDILILSSHKKAYIEINRKAA
ENSP00000386669
RRM
678
737
LLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPL
ENSP00000400257
RRM
745
804
LLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPL
Links
Other
RRM
family RBPs
Other
Homo sapiens
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZNF638
Pan troglodytes
ENSPTRG00000012048
I
0.991
ZNF638
Macaca mulatta
ENSMMUG00000007175
I
0.967
ZNF638
Gorilla gorilla
ENSGGOG00000012511
I
0.954
ZNF638
Choloepus hoffmanni
ENSCHOG00000013922
N
0.883
ZNF638
Callithrix jacchus
ENSCJAG00000019436
I
0.868
ZNF638
Tarsius syrichta
ENSTSYG00000012849
I
0.862
ZNF638
Vicugna pacos
ENSVPAG00000004117
I
0.853
ZNF638
Dasypus novemcinctus
ENSDNOG00000002173
I
0.852
ZNF638
Oryctolagus cuniculus
ENSOCUG00000010045
I
0.844
ZNF638
Canis familiaris
ENSCAFG00000009067
I
0.843
ZNF638
Tursiops truncatus
ENSTTRG00000014220
I
0.841
ZNF638
Equus caballus
ENSECAG00000007715
I
0.838
Zfml
Dipodomys ordii
ENSDORG00000007360
I
0.818
Ame_R002690
Ailuropoda melanoleuca
Ame_R002690
I
0.815
ZNF638
Loxodonta africana
ENSLAFG00000008513
I
0.804
ZNF638
Bos taurus
ENSBTAG00000009242
I
0.804
ZNF638
Pteropus vampyrus
ENSPVAG00000008368
I
0.794
ZNF638
Sorex araneus
ENSSARG00000000956
I
0.738
Zfml
Rattus norvegicus
ENSRNOG00000014501
I
0.723
ZNF638
Cavia porcellus
ENSCPOG00000010101
I
0.712
ZNF638
Echinops telfairi
ENSETEG00000013272
I
0.700