CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ZNF638
(
Loxodonta africana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSLAFG00000008513
T38015_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZNF638
M155_0.6
Homo sapiens
BGUUSKU
RNAcompete
Ray et al.(2013)
RNCMPT00164
0.804
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000007149
RRM
671
729
LVVSELPEDGCTEEDIRKVFQPFGKVSDVLIVPYRKEAYLKMEFKEAITAVMKYAETMP
ENSLAFP00000007149
RRM
899
944
VLVSNLPIKGYSIEDVYNLAKPFGGLNDILVLSSHKKAYIEISRKS
Links
Other
RRM
family RBPs
Other
Loxodonta africana
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZNF638
Dasypus novemcinctus
ENSDNOG00000002173
I
0.822
ZNF638
Pan troglodytes
ENSPTRG00000012048
I
0.813
ZNF638
Oryctolagus cuniculus
ENSOCUG00000010045
I
0.806
ZNF638
Tarsius syrichta
ENSTSYG00000012849
I
0.806
ZNF638
Homo sapiens
ENSG00000075292
D
0.804
ZNF638
Equus caballus
ENSECAG00000007715
I
0.800
ZNF638
Vicugna pacos
ENSVPAG00000004117
I
0.796
ZNF638
Canis familiaris
ENSCAFG00000009067
I
0.796
ZNF638
Gorilla gorilla
ENSGGOG00000012511
I
0.787
ZNF638
Pteropus vampyrus
ENSPVAG00000008368
I
0.781
ZNF638
Tursiops truncatus
ENSTTRG00000014220
I
0.779
Ame_R002690
Ailuropoda melanoleuca
Ame_R002690
I
0.774
ZNF638
Echinops telfairi
ENSETEG00000013272
I
0.773
ZNF638
Macaca mulatta
ENSMMUG00000007175
I
0.770
Zfml
Dipodomys ordii
ENSDORG00000007360
I
0.761
ZNF638
Bos taurus
ENSBTAG00000009242
I
0.748
Zfml
Rattus norvegicus
ENSRNOG00000014501
I
0.712
ZNF638
Callithrix jacchus
ENSCJAG00000019436
I
0.711
ZNF638
Sorex araneus
ENSSARG00000000956
I
0.705