CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Zfml
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000030016
T39304_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000032088
RRM
678
733
LLVSELPEDGFTEEDIRKAFLPFGKISDVLLVPCRNEAYLEMELRKAVTSIMKYIE
ENSMUSP00000032088
RRM
904
954
VFISNLPNKGYSTEEIYNLAKPFGALKDILVLSSHKKAYIEINKKSADSMV
ENSMUSP00000087024
RRM
678
733
LLVSELPEDGFTEEDIRKAFLPFGKISDVLLVPCRNEAYLEMELRKAVTSIMKYIE
ENSMUSP00000087024
RRM
904
954
VFISNLPNKGYSTEEIYNLAKPFGALKDILVLSSHKKAYIEINKKSADSMV
ENSMUSP00000109465
RRM
678
733
LLVSELPEDGFTEEDIRKAFLPFGKISDVLLVPCRNEAYLEMELRKAVTSIMKYIE
ENSMUSP00000109465
RRM
904
954
VFISNLPNKGYSTEEIYNLAKPFGALKDILVLSSHKKAYIEINKKSADSMV
ENSMUSP00000109466
RRM
678
733
LLVSELPEDGFTEEDIRKAFLPFGKISDVLLVPCRNEAYLEMELRKAVTSIMKYIE
ENSMUSP00000109466
RRM
881
931
VFISNLPNKGYSTEEIYNLAKPFGALKDILVLSSHKKAYIEINKKSADSMV
ENSMUSP00000109467
RRM
678
733
LLVSELPEDGFTEEDIRKAFLPFGKISDVLLVPCRNEAYLEMELRKAVTSIMKYIE
ENSMUSP00000109467
RRM
904
954
VFISNLPNKGYSTEEIYNLAKPFGALKDILVLSSHKKAYIEINKKSADSMV
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Zfml
Rattus norvegicus
ENSRNOG00000014501
I
0.963
ZNF638
Oryctolagus cuniculus
ENSOCUG00000010045
I
0.755
Zfml
Dipodomys ordii
ENSDORG00000007360
I
0.750
ZNF638
Tarsius syrichta
ENSTSYG00000012849
I
0.745
ZNF638
Equus caballus
ENSECAG00000007715
I
0.730
ZNF638
Canis familiaris
ENSCAFG00000009067
I
0.723
ZNF638
Tursiops truncatus
ENSTTRG00000014220
I
0.719
ZNF638
Vicugna pacos
ENSVPAG00000004117
I
0.718
ZNF638
Macaca mulatta
ENSMMUG00000007175
I
0.717
Ame_R002690
Ailuropoda melanoleuca
Ame_R002690
I
0.716
ZNF638
Cavia porcellus
ENSCPOG00000010101
I
0.716