CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
Zfml
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000007360
T36469_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZNF638
M155_0.6
Homo sapiens
BGUUSKU
RNAcompete
Ray et al.(2013)
RNCMPT00164
0.818
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000006905
RRM
675
731
LLISELPEDGCTEEDIRKIFQPFGKVNDVLIVPGKKEAYLEMKFKEAITAVMKYIET
ENSDORP00000006905
RRM
899
947
VLISDLPNKGYSVEEIYNLAKPFGGIKDILILSSHKKAYIEINRKSADS
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZNF638
Vicugna pacos
ENSVPAG00000004117
I
0.880
ZNF638
Oryctolagus cuniculus
ENSOCUG00000010045
I
0.880
ZNF638
Tursiops truncatus
ENSTTRG00000014220
I
0.867
ZNF638
Equus caballus
ENSECAG00000007715
I
0.865
ZNF638
Tarsius syrichta
ENSTSYG00000012849
I
0.861
ZNF638
Bos taurus
ENSBTAG00000009242
I
0.847
ZNF638
Pan troglodytes
ENSPTRG00000012048
I
0.827
Ame_R002690
Ailuropoda melanoleuca
Ame_R002690
I
0.822
ZNF638
Homo sapiens
ENSG00000075292
D
0.818
ZNF638
Gorilla gorilla
ENSGGOG00000012511
I
0.818
ZNF638
Canis familiaris
ENSCAFG00000009067
I
0.818
ZNF638
Macaca mulatta
ENSMMUG00000007175
I
0.814
ZNF638
Dasypus novemcinctus
ENSDNOG00000002173
I
0.807
ZNF638
Pteropus vampyrus
ENSPVAG00000008368
I
0.806
Zfml
Rattus norvegicus
ENSRNOG00000014501
I
0.787
ZNF638
Loxodonta africana
ENSLAFG00000008513
I
0.761
Zfml
Mus musculus
ENSMUSG00000030016
N
0.750
ZNF638
Callithrix jacchus
ENSCJAG00000019436
I
0.741
ZNF638
Cavia porcellus
ENSCPOG00000010101
I
0.741
ZNF638
Sorex araneus
ENSSARG00000000956
I
0.722