CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSOCUG00000011704
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000011704
T39692_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000018577
RRM
5
76
LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPS
ENSOCUP00000018577
RRM
98
169
LFVGDLTADVDEGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPMR
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TRNAU1AP
Canis familiaris
ENSCAFG00000011735
N
0.972
LOC100070713
Equus caballus
ENSECAG00000012980
N
0.972
LOC100399818
Callithrix jacchus
ENSCJAG00000009717
N
0.972
TRNAU1AP
Homo sapiens
ENSG00000180098
N
0.972
TRNAU1AP
Pteropus vampyrus
ENSPVAG00000017214
N
0.972
TRNAU1AP
Tursiops truncatus
ENSTTRG00000001854
N
0.972
TRNAU1AP
Gorilla gorilla
ENSGGOG00000003511
N
0.972
TRNAU1AP
Cavia porcellus
ENSCPOG00000001925
N
0.972
TRNAU1AP
Felis catus
ENSFCAG00000013401
N
0.965
TRNAU1AP
Loxodonta africana
ENSLAFG00000007628
N
0.965
TRNAU1AP
Myotis lucifugus
ENSMLUG00000012586
N
0.965
TSAP1_BOVIN
Bos taurus
ENSBTAG00000010393
N
0.965
TRNAU1AP
Tarsius syrichta
ENSTSYG00000003506
N
0.965
Trnau1ap
Mus musculus
ENSMUSG00000028898
N
0.951
TRSPAP1
Gallus gallus
ENSGALG00000001310
N
0.951
TRNAU1AP
Monodelphis domestica
ENSMODG00000010927
N
0.938
TRNAU1AP
Microcebus murinus
ENSMICG00000008386
N
0.938
TRNAU1AP
Sorex araneus
ENSSARG00000007536
N
0.924
TRNAU1AP
Meleagris gallopavo
ENSMGAG00000002105
N
0.917
TRNAU1AP
Taeniopygia guttata
ENSTGUG00000000735
N
0.910
TRNAU1AP
Macropus eugenii
ENSMEUG00000006117
N
0.896
ENSOCUG00000002353
Oryctolagus cuniculus
ENSOCUG00000002353
N
0.868
TRNAU1AP
Pan troglodytes
ENSPTRG00000000434
N
0.736
TRNAU1AP
Otolemur garnettii
ENSOGAG00000002274
N
0.736
TRNAU1AP
Takifugu rubripes
ENSTRUG00000003352
N
0.736
TRNAU1AP
Oryzias latipes
ENSORLG00000010428
N
0.715
TRNAU1AP
Dasypus novemcinctus
ENSDNOG00000010065
N
0.708
TRNAU1AP
Tetraodon nigroviridis
ENSTNIG00000006129
N
0.708
TRNAU1AP
Vicugna pacos
ENSVPAG00000006778
N
0.708
Trnau1ap
Dipodomys ordii
ENSDORG00000006349
N
0.708
TRNAU1AP
Gasterosteus aculeatus
ENSGACG00000001443
N
0.708
TRNAU1AP
Spermophilus tridecemlineatus
ENSSTOG00000000079
N
0.701
TRNAU1AP
Echinops telfairi
ENSETEG00000012594
N
0.701