CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Trnau1ap
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000006349
T36459_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000005943
RRM
42
76
XIPAGYCFVEFADLATAEKCLHKINGKPLPGATPK
ENSDORP00000005943
RRM
97
168
LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TRNAU1AP
Vicugna pacos
ENSVPAG00000006778
N
0.991
TRNAU1AP
Dasypus novemcinctus
ENSDNOG00000010065
N
0.991
TRNAU1AP
Spermophilus tridecemlineatus
ENSSTOG00000000079
N
0.981
TRNAU1AP
Echinops telfairi
ENSETEG00000012594
N
0.972
Ame_R001126
Ailuropoda melanoleuca
Ame_R001126
N
0.963
TRNAU1AP
Tupaia belangeri
ENSTBEG00000008049
N
0.925
TRNAU1AP
Otolemur garnettii
ENSOGAG00000002274
N
0.773
TRNAU1AP
Microcebus murinus
ENSMICG00000008386
N
0.755
TRNAU1AP
Taeniopygia guttata
ENSTGUG00000000735
N
0.748
TRNAU1AP
Sorex araneus
ENSSARG00000007536
N
0.741
TRNAU1AP
Tursiops truncatus
ENSTTRG00000001854
N
0.729
TRNAU1AP
Pteropus vampyrus
ENSPVAG00000017214
N
0.729
LOC100070713
Equus caballus
ENSECAG00000012980
N
0.729
TRNAU1AP
Cavia porcellus
ENSCPOG00000001925
N
0.729
TRNAU1AP
Gorilla gorilla
ENSGGOG00000003511
N
0.729
TRNAU1AP
Canis familiaris
ENSCAFG00000011735
N
0.729
TRNAU1AP
Homo sapiens
ENSG00000180098
N
0.729
LOC100399818
Callithrix jacchus
ENSCJAG00000009717
N
0.729
TRNAU1AP
Loxodonta africana
ENSLAFG00000007628
N
0.729
TRNAU1AP
Meleagris gallopavo
ENSMGAG00000002105
N
0.727
TRNAU1AP
Felis catus
ENSFCAG00000013401
N
0.722
TSAP1_BOVIN
Bos taurus
ENSBTAG00000010393
N
0.722
TRNAU1AP
Tarsius syrichta
ENSTSYG00000003506
N
0.722
TRNAU1AP
Myotis lucifugus
ENSMLUG00000012586
N
0.722
TRNAU1AP
Macropus eugenii
ENSMEUG00000006117
N
0.719
ENSOCUG00000002353
Oryctolagus cuniculus
ENSOCUG00000002353
N
0.715
TRSPAP1
Gallus gallus
ENSGALG00000001310
N
0.715
ENSOCUG00000011704
Oryctolagus cuniculus
ENSOCUG00000011704
N
0.708
TRNAU1AP
Monodelphis domestica
ENSMODG00000010927
N
0.701
Trnau1ap
Mus musculus
ENSMUSG00000028898
N
0.701