CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TRSPAP1
(
Gallus gallus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGALG00000001310
T37598_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000001992
RRM
5
75
LWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP
ENSGALP00000001992
RRM
98
169
LFVGDLTADVDDGMLYEFFVKVYPSCRGGKVVLDQAGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR
Links
Other
RRM
family RBPs
Other
Gallus gallus
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100399818
Callithrix jacchus
ENSCJAG00000009717
N
0.965
TRNAU1AP
Canis familiaris
ENSCAFG00000011735
N
0.965
TRNAU1AP
Tursiops truncatus
ENSTTRG00000001854
N
0.965
TRNAU1AP
Gorilla gorilla
ENSGGOG00000003511
N
0.965
TRNAU1AP
Pteropus vampyrus
ENSPVAG00000017214
N
0.965
TRNAU1AP
Cavia porcellus
ENSCPOG00000001925
N
0.965
TRNAU1AP
Homo sapiens
ENSG00000180098
N
0.965
LOC100070713
Equus caballus
ENSECAG00000012980
N
0.965
TRNAU1AP
Loxodonta africana
ENSLAFG00000007628
N
0.965
TRNAU1AP
Tarsius syrichta
ENSTSYG00000003506
N
0.958
TSAP1_BOVIN
Bos taurus
ENSBTAG00000010393
N
0.958
TRNAU1AP
Felis catus
ENSFCAG00000013401
N
0.958
TRNAU1AP
Taeniopygia guttata
ENSTGUG00000000735
N
0.958
TRNAU1AP
Myotis lucifugus
ENSMLUG00000012586
N
0.958
TRNAU1AP
Monodelphis domestica
ENSMODG00000010927
N
0.958
ENSOCUG00000011704
Oryctolagus cuniculus
ENSOCUG00000011704
N
0.951
TRNAU1AP
Meleagris gallopavo
ENSMGAG00000002105
N
0.944
Trnau1ap
Mus musculus
ENSMUSG00000028898
N
0.937
TRNAU1AP
Microcebus murinus
ENSMICG00000008386
N
0.930
TRNAU1AP
Sorex araneus
ENSSARG00000007536
N
0.916
TRNAU1AP
Macropus eugenii
ENSMEUG00000006117
N
0.910
ENSOCUG00000002353
Oryctolagus cuniculus
ENSOCUG00000002353
N
0.868
TRNAU1AP
Otolemur garnettii
ENSOGAG00000002274
N
0.743
TRNAU1AP
Takifugu rubripes
ENSTRUG00000003352
N
0.729
TRNAU1AP
Pan troglodytes
ENSPTRG00000000434
N
0.722
TRNAU1AP
Dasypus novemcinctus
ENSDNOG00000010065
N
0.720
TRNAU1AP
Vicugna pacos
ENSVPAG00000006778
N
0.720
TRNAU1AP
Oryzias latipes
ENSORLG00000010428
N
0.715
Trnau1ap
Dipodomys ordii
ENSDORG00000006349
N
0.715
TRNAU1AP
Echinops telfairi
ENSETEG00000012594
N
0.713
TRNAU1AP
Spermophilus tridecemlineatus
ENSSTOG00000000079
N
0.708
TRNAU1AP
Gasterosteus aculeatus
ENSGACG00000001443
N
0.708
Ame_R001126
Ailuropoda melanoleuca
Ame_R001126
N
0.706
TRNAU1AP
Tetraodon nigroviridis
ENSTNIG00000006129
N
0.701