CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPD
(
Otolemur garnettii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOGAG00000004075
T39826_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000003631
RRM
99
168
MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID
ENSOGAP00000003631
RRM
206
254
XXVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI
Links
Other
RRM
family RBPs
Other
Otolemur garnettii
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100060733
Equus caballus
ENSECAG00000009344
I
0.830
LOC100400250
Callithrix jacchus
ENSCJAG00000015165
I
0.830
HNRNPD
Canis familiaris
ENSCAFG00000025045
I
0.830
HNRNPD
Ochotona princeps
ENSOPRG00000009336
I
0.830
HNRNPD
Echinops telfairi
ENSETEG00000016709
I
0.830
HNRNPD
Homo sapiens
ENSG00000138668
I
0.830
Hnrnpd
Mus musculus
ENSMUSG00000000568
I
0.830
HNRNPD
Macaca mulatta
ENSMMUG00000014030
I
0.830
HNRNPD
Gorilla gorilla
ENSGGOG00000026760
I
0.830
HNRNPD
Tursiops truncatus
ENSTTRG00000007592
I
0.830
A5D9H5_BOVIN
Bos taurus
ENSBTAG00000013952
I
0.830
HNRNPD
Spermophilus tridecemlineatus
ENSSTOG00000013970
I
0.830
ENSPPYG00000014885
Pongo pygmaeus
ENSPPYG00000014885
I
0.830
HNRNPD
Taeniopygia guttata
ENSTGUG00000002858
I
0.830
HNRNPD
Pteropus vampyrus
ENSPVAG00000000003
I
0.830
HNRNPD
Pan troglodytes
ENSPTRG00000016215
I
0.830
HNRNPD
Choloepus hoffmanni
ENSCHOG00000000045
I
0.824
LOC100397832
Callithrix jacchus
ENSCJAG00000031195
I
0.824
Q5ZIH1_CHICK
Gallus gallus
ENSGALG00000011184
I
0.824
HNRNPD
Loxodonta africana
ENSLAFG00000016483
I
0.824
HNRNPD
Microcebus murinus
ENSMICG00000010984
I
0.824
HNRNPD
Tarsius syrichta
ENSTSYG00000010395
I
0.824
HNRNPD
Oryctolagus cuniculus
ENSOCUG00000001357
I
0.824
HNRNPD
Vicugna pacos
ENSVPAG00000004374
I
0.824
HNRNPD
Meleagris gallopavo
ENSMGAG00000008051
I
0.824
HNRNPD
Monodelphis domestica
ENSMODG00000011898
I
0.824
Ame_R000243
Ailuropoda melanoleuca
Ame_R000243
I
0.824
Hnrpd
Rattus norvegicus
ENSRNOG00000002292
I
0.823
HNRNPD
Ornithorhynchus anatinus
ENSOANG00000001932
I
0.817
Hnrnpd
Dipodomys ordii
ENSDORG00000012507
I
0.817
HNRNPD
Erinaceus europaeus
ENSEEUG00000007552
I
0.809
HNRNPD
Myotis lucifugus
ENSMLUG00000010628
I
0.809
HNRNPD
Sorex araneus
ENSSARG00000006883
I
0.809
HNRNPD
Anolis carolinensis
ENSACAG00000010342
I
0.796
AAH97855
Xenopus laevis
AAH97855
I
0.794
AAU25946
Xenopus laevis
AAU25946
I
0.794
hnrnpd
Xenopus tropicalis
ENSXETG00000012569
I
0.794
HNRNPD
Tupaia belangeri
ENSTBEG00000002327
N
0.789
HNRNPD
Procavia capensis
ENSPCAG00000002182
I
0.787
hnrnpd
Danio rerio
ENSDARG00000059246
I
0.746
HNRNPD
Gasterosteus aculeatus
ENSGACG00000015669
N
0.727
HNRNPD
Oryzias latipes
ENSORLG00000001833
I
0.725
HNRNPD
Takifugu rubripes
ENSTRUG00000018450
I
0.711
HNRNPD
Tetraodon nigroviridis
ENSTNIG00000013499
I
0.711