hnrnpd (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000012569 T42883_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000027493 RRM 40 109
ENSXETP00000027493 RRM 125 195
ENSXETP00000027494 RRM 40 109
ENSXETP00000027494 RRM 125 195

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH97855 Xenopus laevis AAH97855 I 0.979
AAU25946 Xenopus laevis AAU25946 I 0.979
HNRNPD Pan troglodytes ENSPTRG00000016215 I 0.957
HNRNPD Gorilla gorilla ENSGGOG00000026760 I 0.957
LOC100400250 Callithrix jacchus ENSCJAG00000015165 I 0.957
HNRNPD Pteropus vampyrus ENSPVAG00000000003 I 0.957
HNRNPD Spermophilus tridecemlineatus ENSSTOG00000013970 I 0.957
HNRNPD Ochotona princeps ENSOPRG00000009336 I 0.957
LOC100060733 Equus caballus ENSECAG00000009344 I 0.957
HNRNPD Echinops telfairi ENSETEG00000016709 I 0.957
Hnrnpd Mus musculus ENSMUSG00000000568 I 0.957
HNRNPD Macaca mulatta ENSMMUG00000014030 I 0.957
HNRNPD Canis familiaris ENSCAFG00000025045 I 0.957
HNRNPD Homo sapiens ENSG00000138668 I 0.957
ENSPPYG00000014885 Pongo pygmaeus ENSPPYG00000014885 I 0.957
A5D9H5_BOVIN Bos taurus ENSBTAG00000013952 I 0.957
HNRNPD Taeniopygia guttata ENSTGUG00000002858 I 0.957
HNRNPD Tursiops truncatus ENSTTRG00000007592 I 0.957
Ame_R000243 Ailuropoda melanoleuca Ame_R000243 I 0.951
HNRNPD Tarsius syrichta ENSTSYG00000010395 I 0.951
HNRNPD Monodelphis domestica ENSMODG00000011898 I 0.951
HNRNPD Vicugna pacos ENSVPAG00000004374 I 0.951
LOC100397832 Callithrix jacchus ENSCJAG00000031195 I 0.951
HNRNPD Microcebus murinus ENSMICG00000010984 I 0.951
HNRNPD Loxodonta africana ENSLAFG00000016483 I 0.951
HNRNPD Meleagris gallopavo ENSMGAG00000008051 I 0.951
Q5ZIH1_CHICK Gallus gallus ENSGALG00000011184 I 0.951
HNRNPD Oryctolagus cuniculus ENSOCUG00000001357 I 0.951
Hnrpd Rattus norvegicus ENSRNOG00000002292 I 0.950
Hnrnpd Dipodomys ordii ENSDORG00000012507 I 0.944
HNRNPD Ornithorhynchus anatinus ENSOANG00000001932 I 0.944
HNRNPD Choloepus hoffmanni ENSCHOG00000000045 I 0.944
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.936
HNRNPD Myotis lucifugus ENSMLUG00000010628 I 0.936
HNRNPD Sorex araneus ENSSARG00000006883 I 0.936
HNRNPD Anolis carolinensis ENSACAG00000010342 I 0.923
HNRNPD Procavia capensis ENSPCAG00000002182 I 0.915
HNRNPD Tupaia belangeri ENSTBEG00000002327 N 0.866
hnrnpd Danio rerio ENSDARG00000059246 I 0.866
HNRNPD Gasterosteus aculeatus ENSGACG00000015669 N 0.860
HNRNPD Oryzias latipes ENSORLG00000001833 I 0.845
HNRNPD Takifugu rubripes ENSTRUG00000018450 I 0.838
HNRNPD Tetraodon nigroviridis ENSTNIG00000013499 I 0.838
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.803
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.796
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.796
HNRNPD Otolemur garnettii ENSOGAG00000004075 N 0.794
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.775
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.775
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.775
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.775
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.775
HNRNPAB Danio rerio ENSDARG00000017568 I 0.768
AAH43814 Xenopus laevis AAH43814 I 0.768
Hnrnpab Rattus norvegicus ENSRNOG00000003645 I 0.761
Hnrnpab Mus musculus ENSMUSG00000020358 I 0.761
HNRNPAB Oryctolagus cuniculus ENSOCUG00000026424 I 0.755
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.754
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.754
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.754
AAH74212 Xenopus laevis AAH74212 I 0.754
ABV54637 Xenopus laevis ABV54637 I 0.754
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.754
hnrnpab Danio rerio ENSDARG00000007960 I 0.754
HNRNPAB Homo sapiens ENSG00000197451 D 0.754
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.754
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.746
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.746
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.746
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.746
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.746
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.746
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.739
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.739
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.732
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.732
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.725
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.725
LOC100404672 Callithrix jacchus ENSCJAG00000005154 I 0.725
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.725
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.725
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.725
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.725
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.725
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.725
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.725
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.725
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.725
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.725
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.725
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.725
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.725
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.725
HNRPDL Homo sapiens ENSG00000152795 I 0.725
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.725
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.725
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.725
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.725
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.725
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.725
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.725
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.725
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.725
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.725
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.725
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.725
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.718
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.718
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.718
ENSMODG00000006825 Monodelphis domestica ENSMODG00000006825 I 0.711
HNRPDL Myotis lucifugus ENSMLUG00000014452 I 0.711
HNRPDL Erinaceus europaeus ENSEEUG00000004301 I 0.711
ENSCHOG00000002938 Choloepus hoffmanni ENSCHOG00000002938 N 0.704
ENSCHOG00000010831 Choloepus hoffmanni ENSCHOG00000010831 N 0.704
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.704