HNRNPD (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000001833 T40088_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000002282 RRM 59 128
ENSORLP00000002282 RRM 144 212
ENSORLP00000002284 RRM 51 120
ENSORLP00000002284 RRM 136 206
ENSORLP00000002285 RRM 31 100
ENSORLP00000002285 RRM 116 186

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
hnrnpd Danio rerio ENSDARG00000059246 I 0.922
HNRNPD Takifugu rubripes ENSTRUG00000018450 I 0.921
HNRNPD Tetraodon nigroviridis ENSTNIG00000013499 I 0.901
HNRNPD Monodelphis domestica ENSMODG00000011898 I 0.880
HNRNPD Meleagris gallopavo ENSMGAG00000008051 I 0.874
HNRNPD Ornithorhynchus anatinus ENSOANG00000001932 I 0.874
Q5ZIH1_CHICK Gallus gallus ENSGALG00000011184 I 0.874
LOC100400250 Callithrix jacchus ENSCJAG00000015165 I 0.873
LOC100060733 Equus caballus ENSECAG00000009344 I 0.873
HNRNPD Taeniopygia guttata ENSTGUG00000002858 I 0.873
HNRNPD Echinops telfairi ENSETEG00000016709 I 0.873
HNRNPD Canis familiaris ENSCAFG00000025045 I 0.873
A5D9H5_BOVIN Bos taurus ENSBTAG00000013952 I 0.873
HNRNPD Gorilla gorilla ENSGGOG00000026760 I 0.873
HNRNPD Homo sapiens ENSG00000138668 I 0.873
HNRNPD Macaca mulatta ENSMMUG00000014030 I 0.873
HNRNPD Tursiops truncatus ENSTTRG00000007592 I 0.873
ENSPPYG00000014885 Pongo pygmaeus ENSPPYG00000014885 I 0.873
HNRNPD Spermophilus tridecemlineatus ENSSTOG00000013970 I 0.873
HNRNPD Pan troglodytes ENSPTRG00000016215 I 0.873
Hnrnpd Mus musculus ENSMUSG00000000568 I 0.873
HNRNPD Pteropus vampyrus ENSPVAG00000000003 I 0.873
HNRNPD Ochotona princeps ENSOPRG00000009336 I 0.873
HNRNPD Sorex araneus ENSSARG00000006883 I 0.871
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.871
HNRNPD Oryctolagus cuniculus ENSOCUG00000001357 I 0.867
HNRNPD Vicugna pacos ENSVPAG00000004374 I 0.867
Ame_R000243 Ailuropoda melanoleuca Ame_R000243 I 0.867
HNRNPD Loxodonta africana ENSLAFG00000016483 I 0.867
HNRNPD Microcebus murinus ENSMICG00000010984 I 0.867
LOC100397832 Callithrix jacchus ENSCJAG00000031195 I 0.867
HNRNPD Tarsius syrichta ENSTSYG00000010395 I 0.867
Hnrpd Rattus norvegicus ENSRNOG00000002292 I 0.866
HNRNPD Gasterosteus aculeatus ENSGACG00000015669 N 0.866
Hnrnpd Dipodomys ordii ENSDORG00000012507 I 0.860
HNRNPD Choloepus hoffmanni ENSCHOG00000000045 I 0.860
HNRNPD Anolis carolinensis ENSACAG00000010342 I 0.860
HNRNPD Myotis lucifugus ENSMLUG00000010628 I 0.852
hnrnpd Xenopus tropicalis ENSXETG00000012569 I 0.845
HNRNPD Procavia capensis ENSPCAG00000002182 I 0.838
AAH97855 Xenopus laevis AAH97855 I 0.838
AAU25946 Xenopus laevis AAU25946 I 0.838
HNRNPD Tupaia belangeri ENSTBEG00000002327 N 0.783
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.754
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.754
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.754
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.754
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.754
HNRNPAB Oryctolagus cuniculus ENSOCUG00000026424 I 0.748
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.746
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.746
HNRNPAB Homo sapiens ENSG00000197451 D 0.746
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.746
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.746
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.746
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.739
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.739
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.732
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.732
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.732
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.732
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.732
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.730
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.725
Hnrnpab Rattus norvegicus ENSRNOG00000003645 I 0.725
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.725
Hnrnpab Mus musculus ENSMUSG00000020358 I 0.725
HNRNPD Otolemur garnettii ENSOGAG00000004075 N 0.725
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.725
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.725
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.718
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.718
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.718
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.718
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.718
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.711
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.711
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.711
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.711
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.711
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.711
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.711
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.711
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.711
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.711
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.711
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.711
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.711
HNRPDL Homo sapiens ENSG00000152795 I 0.711
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.711
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.711
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.711
AAH43814 Xenopus laevis AAH43814 I 0.711
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.711
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.711
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.711
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.711
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.711
HNRNPAB Danio rerio ENSDARG00000017568 I 0.711
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.711
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.711
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.711
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.711
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.711
hnrnpab Danio rerio ENSDARG00000007960 I 0.709
HNRPDL Myotis lucifugus ENSMLUG00000014452 I 0.704
AAH74212 Xenopus laevis AAH74212 I 0.704
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.704
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.704
ABV54637 Xenopus laevis ABV54637 I 0.704
LOC100390818 Callithrix jacchus ENSCJAG00000012235 I 0.700