SYNCRIP (Ochotona princeps)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOPRG00000010624 T40006_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000009699 RRM 39 107
ENSOPRP00000009699 RRM 120 186
ENSOPRP00000009699 RRM 256 276

Links

Other RRM family RBPs
Other Ochotona princeps RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPR Felis catus ENSFCAG00000019123 I 0.736
SYNCRIP Homo sapiens ENSG00000135316 I 0.730
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.730
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.730
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.730
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.730
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.730
Syncrip Mus musculus ENSMUSG00000032423 I 0.730
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.730
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.730
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.730
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.730
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.730
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.730
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.730
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.730
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.730
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.730
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.730
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.730
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.730
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.730
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.730
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.725
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.725
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.725
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.725
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.725
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.720
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.720
AAH70529 Xenopus laevis AAH70529 I 0.715
syncrip Danio rerio ENSDARG00000040184 I 0.700