CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RAVER1
(
Loxodonta africana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSLAFG00000003664
T37981_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000003058
RRM
59
122
ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAISSFHQSRLRERELS
ENSLAFP00000003058
RRM
132
202
LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSECTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY
ENSLAFP00000003058
RRM
221
291
LCVDHLPPGFSDVDALRRALSVVHTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGSHLR
ENSLAFP00000019199
RRM
39
102
ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAISSFHQSRLRERELS
ENSLAFP00000019199
RRM
112
182
LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSECTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY
ENSLAFP00000019199
RRM
201
271
LCVDHLPPGFSDVDALRRALSVVHTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGSHLR
ENSLAFP00000027997
RRM
59
122
ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAISSFHQSRLRERELS
ENSLAFP00000027997
RRM
132
202
LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSECTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY
ENSLAFP00000027997
RRM
221
291
LCVDHLPPGFSDVDALRRALSVVHTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGSHLR
ENSLAFP00000028468
RRM
59
122
ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAISSFHQSRLRERELS
ENSLAFP00000028468
RRM
132
202
LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSECTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY
ENSLAFP00000028468
RRM
221
291
LCVDHLPPGFSDVDALRRALSVVHTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGSHLR
Links
Other
RRM
family RBPs
Other
Loxodonta africana
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RAVER1
Sus scrofa
ENSSSCG00000013650
N
0.985
A4FUZ2_BOVIN
Bos taurus
ENSBTAG00000015721
N
0.981
RAVER1
Canis familiaris
ENSCAFG00000017861
N
0.976
RAVER1
Tursiops truncatus
ENSTTRG00000009552
N
0.976
RAVER1
Pteropus vampyrus
ENSPVAG00000003689
N
0.971
Raver1
Dipodomys ordii
ENSDORG00000010106
N
0.961
RAVER1
Felis catus
ENSFCAG00000009435
N
0.961
RAVER1
Spermophilus tridecemlineatus
ENSSTOG00000003241
N
0.951
Raver1
Rattus norvegicus
ENSRNOG00000020710
N
0.951
RAVER1
Oryctolagus cuniculus
ENSOCUG00000020918
N
0.947
RAVER1
Cavia porcellus
ENSCPOG00000001008
N
0.947
Raver1
Mus musculus
ENSMUSG00000010205
N
0.942
RAVER1
Microcebus murinus
ENSMICG00000010326
N
0.942
RAVER1
Equus caballus
ENSECAG00000024966
N
0.932
RAVER1
Pan troglodytes
ENSPTRG00000010466
N
0.922
Ame_R009605
Ailuropoda melanoleuca
Ame_R009605
N
0.922
RAVER1
Homo sapiens
ENSG00000161847
N
0.922
RAVER1
Gorilla gorilla
ENSGGOG00000006015
N
0.917
ENSPPYG00000010514
Pongo pygmaeus
ENSPPYG00000010514
N
0.917
RAVER1
Monodelphis domestica
ENSMODG00000005584
N
0.874
RAVER1
Macaca mulatta
ENSMMUG00000014897
N
0.874
RAVER1
Myotis lucifugus
ENSMLUG00000012328
N
0.786
RAVER1
Macropus eugenii
ENSMEUG00000003281
N
0.777
RAVER1
Anolis carolinensis
ENSACAG00000008386
N
0.757
RAVER1
Oryzias latipes
ENSORLG00000005458
N
0.704