CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000008198
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000008198
T40494_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000009215
RRM
27
90
TAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSP
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RDM1
Homo sapiens
ENSG00000187456
N
1.000
RDM1
Pan troglodytes
ENSPTRG00000009031
N
1.000
RDM1
Macaca mulatta
ENSMMUG00000006847
N
0.984
RDM1
Gorilla gorilla
ENSGGOG00000010584
N
0.984
LOC100388328
Callithrix jacchus
ENSCJAG00000015031
N
0.953
LOC100063820
Equus caballus
ENSECAG00000022182
N
0.922
RDM1
Bos taurus
ENSBTAG00000000030
N
0.891
RDM1
Pteropus vampyrus
ENSPVAG00000001116
N
0.859
RDM1
Loxodonta africana
ENSLAFG00000029300
N
0.844
RDM1
Otolemur garnettii
ENSOGAG00000011332
N
0.831
RDM1
Macropus eugenii
ENSMEUG00000015826
N
0.812
Rdm1
Mus musculus
ENSMUSG00000010362
N
0.812
Rdm1
Rattus norvegicus
ENSRNOG00000020751
N
0.797
RDM1
Felis catus
ENSFCAG00000003868
N
0.773
RDM1
Monodelphis domestica
ENSMODG00000011101
N
0.758
RDM1
Oryctolagus cuniculus
ENSOCUG00000022704
N
0.750
Ame_R020790
Ailuropoda melanoleuca
Ame_R020790
N
0.742
RDM1
Erinaceus europaeus
ENSEEUG00000006127
N
0.727
ENSSSCG00000017574
Sus scrofa
ENSSSCG00000017574
N
0.727
RDM1
Cavia porcellus
ENSCPOG00000001495
N
0.719
RDM1
Tupaia belangeri
ENSTBEG00000010030
N
0.712