D4AB76_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000032584 T41217_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.785
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.785
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.785
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000045057 RRM 16 83
ENSRNOP00000045057 RRM 102 170

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.750
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.748
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.746
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.743
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.743
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.743
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.743
HNRNPA1 Homo sapiens ENSG00000135486 D 0.743
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.743
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.743
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.743
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.743
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.743
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.743
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.743
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.743
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.743
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.743
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.743
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.743
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.743
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.743
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.743
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.743
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.743
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.743
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.743
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.743
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.743
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.743
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.743
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.743
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.743
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.738
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.738
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.736
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.736
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.736
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.736
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.736
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.736
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.733
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.730
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.730
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.730
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.730
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.730
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.730
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.730
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.730
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.730
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.730
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.724
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.723
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.723
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.723
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.723
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.723
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.723
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.722
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.720
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.716
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.716
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.716
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.716
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.716
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.716
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.716
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.716
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.716
LOC785445 Bos taurus ENSBTAG00000025621 I 0.716
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.715
LOC100054206 Equus caballus ENSECAG00000006699 I 0.714
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.714
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.714
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.714
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.712
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.712
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.711
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.711
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.709
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.709
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.709
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.709
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.709
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.707
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.707
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.707
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.706
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.705
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.703
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.703
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.703
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.703
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.703
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.701
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.701