|
LOC100397230
(Callithrix jacchus)
RRM
|
RBP Information |
Pfam ID |
Interpro ID |
Gene ID |
CISBP-RNA ID |
Sequence source |
PF00076 (RRM_1) |
IPR000504 |
ENSCJAG00000014791 |
T35611_0.6 |
Ensembl (2011-Oct-26) |
Link out |
Directly determined binding motifs |
Name/Motif ID |
Species |
Sequence Logo |
IUPAC |
Type/Study/Study ID |
RBD Identity |
No direct experiments |
|
|
|
|
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Motifs from related RBPs |
Name/Motif ID |
Species |
Sequence Logo |
IUPAC |
Type/Study/Study ID |
RBD Identity |
HNRNPA1
M312_0.6 |
Homo sapiens |
Sequence logo not available |
UAGGGW |
RIP-chip
Cook et al.(2011)
560_17925491
|
0.943
|
HNRNPA1
M271_0.6 |
Homo sapiens |
 |
UAGGGW |
SELEX
Cook et al.(2011)
23_7510636
|
0.943
|
HNRNPA1
M022_0.6 |
Homo sapiens |
 |
DUAGGGW |
RNAcompete
Ray et al.(2013)
RNCMPT00022
|
0.943
|
HNRNPA1L2
M023_0.6 |
Homo sapiens |
 |
DUAGGGW |
RNAcompete
Ray et al.(2013)
RNCMPT00023
|
0.922
|
HNRNPA2B1
M024_0.6 |
Homo sapiens |
 |
DUAGGGW |
RNAcompete
Ray et al.(2013)
RNCMPT00024
|
0.773
|
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif |