CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBFOX3
(
Tupaia belangeri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTBEG00000004296
T41716_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTBEP00000003717
RRM
102
137
VIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKXX
Links
Other
RRM
family RBPs
Other
Tupaia belangeri
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBFOX1
Microcebus murinus
ENSMICG00000003371
N
0.875
Rbfox1
Dipodomys ordii
ENSDORG00000010024
N
0.875
ENSTRUG00000002748
Takifugu rubripes
ENSTRUG00000002748
I
0.786
GL15466
Drosophila persimilis
FBgn0153070
N
0.756
Rbfox3
Mus musculus
ENSMUSG00000025576
I
0.717
Rbfox1
Mus musculus
ENSMUSG00000008658
I
0.717
Rbfox2
Mus musculus
ENSMUSG00000033565
I
0.717
A2bp1
Rattus norvegicus
ENSRNOG00000002827
I
0.717
Rbm9
Rattus norvegicus
ENSRNOG00000004688
I
0.717
Hrnbp3
Rattus norvegicus
ENSRNOG00000003386
I
0.717
ENSMODG00000002089
Monodelphis domestica
ENSMODG00000002089
I
0.717
RBFOX1
Canis familiaris
ENSCAFG00000019082
I
0.717
RBFOX1
Tetraodon nigroviridis
ENSTNIG00000002567
N
0.717
ENSTRUG00000004894
Takifugu rubripes
ENSTRUG00000004894
I
0.717
AAH72029
Xenopus laevis
AAH72029
N
0.702
FOX1C_BOVIN
Bos taurus
ENSBTAG00000006280
I
0.702
ENSORLG00000004268
Oryzias latipes
ENSORLG00000004268
N
0.702
ENSCSAVG00000005757
Ciona savignyi
ENSCSAVG00000005757
N
0.700