CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GL15466
(
Drosophila persimilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0153070
T43711_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0179573
RRM
999
1039
LHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKERD
Links
Other
RRM
family RBPs
Other
Drosophila persimilis
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBFOX1
Microcebus murinus
ENSMICG00000003371
N
0.878
Rbfox1
Dipodomys ordii
ENSDORG00000010024
N
0.878
ENSTRUG00000002748
Takifugu rubripes
ENSTRUG00000002748
I
0.857
Hrnbp3
Rattus norvegicus
ENSRNOG00000003386
I
0.783
A2bp1
Rattus norvegicus
ENSRNOG00000002827
I
0.783
ENSTRUG00000004894
Takifugu rubripes
ENSTRUG00000004894
I
0.783
Rbm9
Rattus norvegicus
ENSRNOG00000004688
I
0.783
RBFOX1
Tetraodon nigroviridis
ENSTNIG00000002567
N
0.783
Rbfox2
Mus musculus
ENSMUSG00000033565
I
0.783
Rbfox3
Mus musculus
ENSMUSG00000025576
I
0.783
ENSMODG00000002089
Monodelphis domestica
ENSMODG00000002089
I
0.783
RBFOX1
Canis familiaris
ENSCAFG00000019082
I
0.783
Rbfox1
Mus musculus
ENSMUSG00000008658
I
0.783
FOX1C_BOVIN
Bos taurus
ENSBTAG00000006280
I
0.766
AAH72029
Xenopus laevis
AAH72029
N
0.766
ENSORLG00000004268
Oryzias latipes
ENSORLG00000004268
N
0.766
ENSGACG00000015968
Gasterosteus aculeatus
ENSGACG00000015968
I
0.761
RBFOX3
Tupaia belangeri
ENSTBEG00000004296
N
0.756
ENSCSAVG00000005757
Ciona savignyi
ENSCSAVG00000005757
N
0.756