CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GL17620
(
Drosophila persimilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0155223
T43719_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0181727
RRM
75
145
LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ
Links
Other
RRM
family RBPs
Other
Drosophila persimilis
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM21093
Drosophila sechellia
FBgn0175974
N
1.000
GG23412
Drosophila erecta
FBgn0115559
N
1.000
tsu
Drosophila melanogaster
FBgn0033378
N
1.000
GA21317-RA
Drosophila pseudoobscura
FBgn0081305
N
1.000
GF11955
Drosophila ananassae
FBgn0088994
N
1.000
GD10630
Drosophila simulans
FBgn0182397
N
1.000
GE19253
Drosophila yakuba
FBgn0236606
N
1.000
GK23248
Drosophila willistoni
FBgn0225210
N
1.000
GH19854
Drosophila grimshawi
FBgn0127318
N
0.972
GI19803
Drosophila mojavensis
FBgn0142540
I
0.972
GJ18464
Drosophila virilis
FBgn0205623
N
0.972
AAEL006748
Aedes aegypti
AAEL006748
N
0.859
AGAP006365
Anopheles gambiae
AGAP006365
I
0.845
CpipJ_CPIJ007339
Culex pipiens
CpipJ_CPIJ007339
I
0.845
CPIJ007339
Culex quinquefasciatus
CPIJ007339
I
0.845
gw.10.199.1
Nematostella vectensis
gw.10.199.1
N
0.761
e_gw.27.177.1
Nematostella vectensis
e_gw.27.177.1
N
0.761
gw.617.10.1
Nematostella vectensis
gw.617.10.1
N
0.761
PHUM390470
Pediculus humanus
PHUM390470
N
0.746
amel4_ncbi_hmm2170
Apis mellifera
amel4_ncbi_hmm2170
I
0.732
estExt_fgenesh2_pg.C_4600002
Branchiostoma floridae
estExt_fgenesh2_pg.C_4600002
I
0.718
nasonia_NCBI_hmm460663
Nasonia vitripennis
nasonia_NCBI_hmm460663
I
0.718
e_gw.589.3.1
Branchiostoma floridae
e_gw.589.3.1
I
0.718
RBM8A
Macropus eugenii
ENSMEUG00000016058
I
0.704
AAH73361
Xenopus laevis
AAH73361
I
0.704
estExt_Genewise1.C_210127
Daphnia pulex
estExt_Genewise1.C_210127
I
0.704
e_gw1.53.304.1
Lottia gigantea
e_gw1.53.304.1
I
0.704
AAG27092
Xenopus laevis
AAG27092
I
0.704
AAH56659
Xenopus laevis
AAH56659
I
0.704
Q9DF42
Xenopus laevis
Q9DF42
I
0.704
Q6PH90
Xenopus laevis
Q6PH90
I
0.704
LOAG_04407
Loa loa
LOAG_04407
N
0.704