CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM390470
(
Pediculus humanus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PHUM390470
T45356_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM390470-PA
RRM
66
136
LFVTSIHEEAQEDDIHETFSEHGEIKNLHLNLDRRTGYLKGYALVEYETYEEALQAKEALNGAKILDQQIG
Links
Other
RRM
family RBPs
Other
Pediculus humanus
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ007339
Culex pipiens
CpipJ_CPIJ007339
I
0.775
CPIJ007339
Culex quinquefasciatus
CPIJ007339
I
0.775
AAEL006748
Aedes aegypti
AAEL006748
N
0.775
AGAP006365
Anopheles gambiae
AGAP006365
I
0.761
gw.617.10.1
Nematostella vectensis
gw.617.10.1
N
0.761
nasonia_NCBI_hmm460663
Nasonia vitripennis
nasonia_NCBI_hmm460663
I
0.761
gw.10.199.1
Nematostella vectensis
gw.10.199.1
N
0.761
e_gw.27.177.1
Nematostella vectensis
e_gw.27.177.1
N
0.761
GG23412
Drosophila erecta
FBgn0115559
N
0.746
GF11955
Drosophila ananassae
FBgn0088994
N
0.746
GA21317-RA
Drosophila pseudoobscura
FBgn0081305
N
0.746
GL17620
Drosophila persimilis
FBgn0155223
N
0.746
GM21093
Drosophila sechellia
FBgn0175974
N
0.746
tsu
Drosophila melanogaster
FBgn0033378
N
0.746
GE19253
Drosophila yakuba
FBgn0236606
N
0.746
GD10630
Drosophila simulans
FBgn0182397
N
0.746
GK23248
Drosophila willistoni
FBgn0225210
N
0.746
GI19803
Drosophila mojavensis
FBgn0142540
I
0.732
GJ18464
Drosophila virilis
FBgn0205623
N
0.732
amel4_ncbi_hmm2170
Apis mellifera
amel4_ncbi_hmm2170
I
0.732
GH19854
Drosophila grimshawi
FBgn0127318
N
0.732
RBM8A
Macropus eugenii
ENSMEUG00000016058
I
0.718
RBM8A
Takifugu rubripes
ENSTRUG00000013173
I
0.718
estExt_fgenesh2_pg.C_4600002
Branchiostoma floridae
estExt_fgenesh2_pg.C_4600002
I
0.718
e_gw.589.3.1
Branchiostoma floridae
e_gw.589.3.1
I
0.718
e_gw1.53.304.1
Lottia gigantea
e_gw1.53.304.1
I
0.718
RBM8A
Gasterosteus aculeatus
ENSGACG00000013157
I
0.718
RBM8A
Tetraodon nigroviridis
ENSTNIG00000006869
I
0.718
RBM8A
Spermophilus tridecemlineatus
ENSSTOG00000013917
I
0.704
DGIL_AUG5s13034g4t1
Acyrtosiphon pisum
DGIL_AUG5s13034g4t1
I
0.704
DGIL_AUG5s25g7t1
Acyrtosiphon pisum
DGIL_AUG5s25g7t1
I
0.704
rbm8a
Danio rerio
ENSDARG00000016516
I
0.704
Q8JJC6_ORYLA
Oryzias latipes
ENSORLG00000016263
I
0.704