estExt_Genewise1.C_210127 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_210127 T51221_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM8A
M054_0.6 		Homo sapiens RYGCGCB RNAcompete
Ray et al.(2013)
RNCMPT00056 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_210127 RRM 74 144

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.589.3.1 Branchiostoma floridae e_gw.589.3.1 I 0.817
rbm8a Danio rerio ENSDARG00000016516 I 0.817
estExt_fgenesh2_pg.C_4600002 Branchiostoma floridae estExt_fgenesh2_pg.C_4600002 I 0.817
RBM8A Gorilla gorilla ENSGGOG00000005422 I 0.803
ENSLAFG00000021886 Loxodonta africana ENSLAFG00000021886 I 0.803
RBM8A Monodelphis domestica ENSMODG00000018752 I 0.803
RBM8A Gasterosteus aculeatus ENSGACG00000013157 I 0.803
RBM8A Macaca mulatta ENSMMUG00000016051 I 0.803
RBM8A Felis catus ENSFCAG00000005412 I 0.803
Q6DTK7_HORSE Equus caballus ENSECAG00000022024 I 0.803
ENSETEG00000017932 Echinops telfairi ENSETEG00000017932 I 0.803
Rbm8a Mus musculus ENSMUSG00000038374 I 0.803
RBM8A Homo sapiens ENSG00000131795 D 0.803
RBM8A Oryctolagus cuniculus ENSOCUG00000025693 I 0.803
RBM8A Sorex araneus ENSSARG00000013289 I 0.803
RBM8A Sus scrofa ENSSSCG00000006684 I 0.803
RBM8A Tursiops truncatus ENSTTRG00000009081 I 0.803
e_gw1.53.304.1 Lottia gigantea e_gw1.53.304.1 I 0.803
Rbm8a Rattus norvegicus ENSRNOG00000021215 I 0.803
RBM8A Pteropus vampyrus ENSPVAG00000014471 I 0.803
RBM8A Cavia porcellus ENSCPOG00000022453 I 0.803
RBM8A Otolemur garnettii ENSOGAG00000000202 I 0.803
ENSPPYG00000000929 Pongo pygmaeus ENSPPYG00000000929 I 0.803
RBM8A Pan troglodytes ENSPTRG00000001201 I 0.803
B020018G12Rik Mus musculus ENSMUSG00000078184 I 0.803
RBM8A Macropus eugenii ENSMEUG00000016058 I 0.803
AAH73361 Xenopus laevis AAH73361 I 0.803
Q6PH90 Xenopus laevis Q6PH90 I 0.803
AAH56659 Xenopus laevis AAH56659 I 0.803
AAG27092 Xenopus laevis AAG27092 I 0.803
Ame_R013073 Ailuropoda melanoleuca Ame_R013073 I 0.803
LOC100399389 Callithrix jacchus ENSCJAG00000002209 I 0.803
nasonia_NCBI_hmm460663 Nasonia vitripennis nasonia_NCBI_hmm460663 I 0.803
Q9DF42 Xenopus laevis Q9DF42 I 0.803
RBM8A_BOVIN Bos taurus ENSBTAG00000008369 I 0.803
RBM8A Canis familiaris ENSCAFG00000023172 I 0.803
Q8JJC6_ORYLA Oryzias latipes ENSORLG00000016263 I 0.789
RBM8A Tetraodon nigroviridis ENSTNIG00000006869 I 0.789
RBM8A Spermophilus tridecemlineatus ENSSTOG00000013917 I 0.789
RBM8A Takifugu rubripes ENSTRUG00000013173 I 0.789
ENSPCAG00000002146 Procavia capensis ENSPCAG00000002146 I 0.789
amel4_ncbi_hmm2170 Apis mellifera amel4_ncbi_hmm2170 I 0.789
CPIJ007339 Culex quinquefasciatus CPIJ007339 I 0.775
AAEL006748 Aedes aegypti AAEL006748 N 0.775
CpipJ_CPIJ007339 Culex pipiens CpipJ_CPIJ007339 I 0.775
B5FZD1_TAEGU Taeniopygia guttata ENSTGUG00000004447 I 0.775
AGAP006365 Anopheles gambiae AGAP006365 I 0.761
e_gw.27.177.1 Nematostella vectensis e_gw.27.177.1 N 0.746
gw.617.10.1 Nematostella vectensis gw.617.10.1 N 0.746
gw.10.199.1 Nematostella vectensis gw.10.199.1 N 0.746
Smp_002550 Schistosoma mansoni Smp_002550 I 0.732
Sjc_0039250 Schistosoma japonicum Sjc_0039250 I 0.732
DGIL_AUG5s25g7t1 Acyrtosiphon pisum DGIL_AUG5s25g7t1 I 0.732
DGIL_AUG5s13034g4t1 Acyrtosiphon pisum DGIL_AUG5s13034g4t1 I 0.732
166240 Helobdella robusta 166240 N 0.718
XP_792124.1 Strongylocentrotus purpuratus XP_792124.1 I 0.718
XP_001194199.1 Strongylocentrotus purpuratus XP_001194199.1 I 0.718
tsu Drosophila melanogaster FBgn0033378 N 0.704
Aqu1.218379 Amphimedon queenslandica Aqu1.218379 N 0.704
CBN21335 Caenorhabditis brenneri CBN21335 N 0.704
CJA17011 Caenorhabditis japonica CJA17011 I 0.704
estExt_fgenesh1_pg.C_1530030 Capitella teleta estExt_fgenesh1_pg.C_1530030 I 0.704
GA21317-RA Drosophila pseudoobscura FBgn0081305 N 0.704
GE19253 Drosophila yakuba FBgn0236606 N 0.704
GL17620 Drosophila persimilis FBgn0155223 N 0.704
GG23412 Drosophila erecta FBgn0115559 N 0.704
GM21093 Drosophila sechellia FBgn0175974 N 0.704
GD10630 Drosophila simulans FBgn0182397 N 0.704
GK23248 Drosophila willistoni FBgn0225210 N 0.704
GF11955 Drosophila ananassae FBgn0088994 N 0.704