CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GL23974
(
Drosophila persimilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0161564
T43763_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0188081
RRM
57
126
LFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSSAGEHIINSKKVD
FBpp0188081
RRM
137
205
IFVGGLTTEISDEEIQTYFSQFGNIVEVEMPFDKQKSQRTDFCFITLDSEQVVTDLLKTSIQKISVKEV
Links
Other
RRM
family RBPs
Other
Drosophila persimilis
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA14206-RA
Drosophila pseudoobscura
FBgn0074235
N
0.943
GI10695
Drosophila mojavensis
FBgn0133459
N
0.914
GG17035
Drosophila erecta
FBgn0109263
N
0.907
GJ23113
Drosophila virilis
FBgn0210215
N
0.907
sqd
Drosophila melanogaster
FBgn0086897
N
0.907
GK13337
Drosophila willistoni
FBgn0215346
N
0.900
GF17370
Drosophila ananassae
FBgn0094388
N
0.893
GM25920
Drosophila sechellia
FBgn0180776
N
0.893
GH19060
Drosophila grimshawi
FBgn0126527
N
0.893
GE24428
Drosophila yakuba
FBgn0241545
N
0.893
GD20486
Drosophila simulans
FBgn0191957
N
0.886
AAEL005515
Aedes aegypti
AAEL005515
N
0.771
CPIJ011536
Culex quinquefasciatus
CPIJ011536
N
0.750
BGIBMGA013464
Bombyx mori
BGIBMGA013464
N
0.750
CpipJ_CPIJ011536
Culex pipiens
CpipJ_CPIJ011536
N
0.750
AGAP000399
Anopheles gambiae
AGAP000399
N
0.743
nasonia_NCBI_hmm138813
Nasonia vitripennis
nasonia_NCBI_hmm138813
N
0.736
AGAP006668
Anopheles gambiae
AGAP006668
N
0.736
amel4_ncbi_hmm2459
Apis mellifera
amel4_ncbi_hmm2459
N
0.729