CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G102808
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G102808
T54109_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G102808_P02
RRM
15
81
VKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQIAYVTFKDAQGAETALLLSGATIVDLSVI
GRMZM2G102808_P03
RRM
17
83
VKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQIAYVTFKDAQGAETALLLSGATIVDLSVI
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB10G000940
Sorghum bicolor
Sb10g000940
N
0.985
BRADI1G51740
Brachypodium distachyon
BRADI1G51740
N
0.970
BGIOSIBCE020376
Oryza indica
BGIOSIBCE020376
N
0.970
LOC_Os06g02240
Oryza sativa
LOC_Os06g02240
N
0.970
GRMZM2G051890
Zea mays
GRMZM2G051890
N
0.970
PDK_20s1613681g001
Phoenix dactylifera
PDK_20s1613681g001
N
0.851
GSVIVG00013098001
Vitis vinifera
GSVIVG00013098001
N
0.836
Medtr8g077770
Medicago truncatula
Medtr8g077770
N
0.806
GSVIVG00024381001
Vitis vinifera
GSVIVG00024381001
N
0.806
PDK_20s1346002g005
Phoenix dactylifera
PDK_20s1346002g005
N
0.791
PK05006.1
Cannabis sativa
PK05006.1
N
0.791
30073.m002271
Ricinus communis
30073.m002271
N
0.776
mgf007506m
Mimulus guttatus
mgf007506m
N
0.776
A9PE83_POPTR
Populus trichocarpa
POPTR_0001s02090
N
0.776
Medtr5g029540
Medicago truncatula
Medtr5g029540
N
0.776
PDK_20s1330821g002
Phoenix dactylifera
PDK_20s1330821g002
N
0.761
B9GZI4_POPTR
Populus trichocarpa
POPTR_0003s09410
N
0.761
29682.m000595
Ricinus communis
29682.m000595
N
0.761
Glyma01g01950.1
Glycine max
Glyma01g01950.1
N
0.754
Cucsa.322000
Cucumis sativus
Cucsa.322000
N
0.754
Glyma09g33960.1
Glycine max
Glyma09g33960.1
N
0.739
BRADI1G10760
Brachypodium distachyon
BRADI1G10760
N
0.739
LOC_Os04g53330
Oryza sativa
LOC_Os04g53330
N
0.731
MDP0000596287
Malus x domestica
MDP0000596287
N
0.731
BGIOSIBCE016670
Oryza indica
BGIOSIBCE016670
N
0.731
cassava25245.valid.m1
Manihot esculenta
cassava25245.valid.m1
N
0.721
AT4G17720
Arabidopsis thaliana
AT4G17720-TAIR-G
N
0.721
mgf014593m
Mimulus guttatus
mgf014593m
N
0.716
GRMZM2G114789
Zea mays
GRMZM2G114789
N
0.716
GRMZM2G035719
Zea mays
GRMZM2G035719
N
0.710
GRMZM2G127559
Zea mays
GRMZM2G127559
N
0.710
LOC_Os03g50560
Oryza sativa
LOC_Os03g50560
N
0.710
BGIOSIBCE012743
Oryza indica
BGIOSIBCE012743
N
0.710
SB01G010170
Sorghum bicolor
Sb01g010170
N
0.710
cassava25244.valid.m1
Manihot esculenta
cassava25244.valid.m1
N
0.710
XM_002867996.1
Arabidopsis lyrata
fgenesh2_kg.7__2538__AT4G17720.1
N
0.706
MDP0000177505
Malus x domestica
MDP0000177505
N
0.701