CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSVIVG00016345001
(
Vitis vinifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSVIVG00016345001
T44675_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSVIVT00016345001
RRM
1
54
MRDHFEKYGEILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPMINGRR
Links
Other
RRM
family RBPs
Other
Vitis vinifera
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT3G54770
Arabidopsis thaliana
AT3G54770-TAIR-G
N
0.782
29923.m000811
Ricinus communis
29923.m000811
I
0.779
PK29603.1
Cannabis sativa
PK29603.1
I
0.739
MDP0000125082
Malus x domestica
MDP0000125082
I
0.735
MDP0000308970
Malus x domestica
MDP0000308970
I
0.721
ppa026384m
Prunus persica
ppa026384m
I
0.721
cassava2993.m1
Manihot esculenta
cassava2993.m1
I
0.706
A9P7Z9_POPTR
Populus trichocarpa
POPTR_0010s22380
I
0.706