ppa026384m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa026384m T58523_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa026384m RRM 20 87

Links

Other RRM family RBPs
Other Prunus persica RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000308970 Malus x domestica MDP0000308970 I 0.971
MDP0000125082 Malus x domestica MDP0000125082 I 0.941
29923.m000811 Ricinus communis 29923.m000811 I 0.941
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.912
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.912
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.912
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.912
PK29603.1 Cannabis sativa PK29603.1 I 0.899
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.897
SB01G038700 Sorghum bicolor Sb01g038700 I 0.897
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.884
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.882
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.882
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.868
mgf016660m Mimulus guttatus mgf016660m I 0.838
Glyma07g05250.1 Glycine max Glyma07g05250.1 N 0.829
Glyma16g01780.1 Glycine max Glyma16g01780.1 N 0.803
XM_002877953.1 Arabidopsis lyrata fgenesh2_kg.5__1875__AT3G54770.1 N 0.797
AT3G54770 Arabidopsis thaliana AT3G54770-TAIR-G N 0.783
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.739
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.735
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.735
GSVIVG00016345001 Vitis vinifera GSVIVG00016345001 N 0.721
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.721
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.710
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.710
ppa009716m Prunus persica ppa009716m I 0.706
29983.m003293 Ricinus communis 29983.m003293 I 0.706
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.706
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.706
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.706
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.706
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.706