MDP0000308970 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000308970 T57622_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000308970 RRM 20 87

Links

Other RRM family RBPs
Other Malus x domestica RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa026384m Prunus persica ppa026384m I 0.971
29923.m000811 Ricinus communis 29923.m000811 I 0.941
MDP0000125082 Malus x domestica MDP0000125082 I 0.941
PK29603.1 Cannabis sativa PK29603.1 I 0.899
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.882
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.882
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.882
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.882
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.882
SB01G038700 Sorghum bicolor Sb01g038700 I 0.868
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.855
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.853
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.853
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.853
mgf016660m Mimulus guttatus mgf016660m I 0.809
Glyma07g05250.1 Glycine max Glyma07g05250.1 N 0.800
Glyma16g01780.1 Glycine max Glyma16g01780.1 N 0.775
XM_002877953.1 Arabidopsis lyrata fgenesh2_kg.5__1875__AT3G54770.1 N 0.768
AT3G54770 Arabidopsis thaliana AT3G54770-TAIR-G N 0.754
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.735
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.721
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.721
GSVIVG00016345001 Vitis vinifera GSVIVG00016345001 N 0.721
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.721
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.710
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.710
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.710
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.706
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.706
ppa009716m Prunus persica ppa009716m I 0.706
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.706
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.706
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.706