29923.m000811 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29923.m000811 T48713_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
29923.m000811 RRM 18 85

Links

Other RRM family RBPs
Other Ricinus communis RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa026384m Prunus persica ppa026384m I 0.941
MDP0000125082 Malus x domestica MDP0000125082 I 0.941
MDP0000308970 Malus x domestica MDP0000308970 I 0.941
PK29603.1 Cannabis sativa PK29603.1 I 0.928
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.926
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.912
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.897
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.897
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.882
SB01G038700 Sorghum bicolor Sb01g038700 I 0.868
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.868
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.853
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.841
mgf016660m Mimulus guttatus mgf016660m I 0.838
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.838
Glyma07g05250.1 Glycine max Glyma07g05250.1 N 0.800
XM_002877953.1 Arabidopsis lyrata fgenesh2_kg.5__1875__AT3G54770.1 N 0.797
Glyma16g01780.1 Glycine max Glyma16g01780.1 N 0.789
AT3G54770 Arabidopsis thaliana AT3G54770-TAIR-G N 0.783
GSVIVG00016345001 Vitis vinifera GSVIVG00016345001 N 0.779
ppa009716m Prunus persica ppa009716m I 0.750
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.750
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.750
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.750
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.750
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.739
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.735
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.725
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.725
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.721
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.721
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.721
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.721
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.721
29908.m006046 Ricinus communis 29908.m006046 I 0.706
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.706
MDP0000184420 Malus x domestica MDP0000184420 I 0.706
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.706
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.706
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.706
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.706
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.706
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.706
MDP0000548950 Malus x domestica MDP0000548950 I 0.706
MDP0000488395 Malus x domestica MDP0000488395 I 0.706
mgf017214m Mimulus guttatus mgf017214m I 0.706
MDP0000744398 Malus x domestica MDP0000744398 I 0.706