AT3G54770 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT3G54770-TAIR-G T32763_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G54770.1-P RRM 19 87
AT3G54770.2-P RRM 1 55

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002877953.1 Arabidopsis lyrata fgenesh2_kg.5__1875__AT3G54770.1 N 0.986
mgf016660m Mimulus guttatus mgf016660m I 0.841
PK29603.1 Cannabis sativa PK29603.1 I 0.812
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.812
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.812
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.797
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.783
29923.m000811 Ricinus communis 29923.m000811 I 0.783
ppa026384m Prunus persica ppa026384m I 0.783
GSVIVG00016345001 Vitis vinifera GSVIVG00016345001 N 0.782
SB01G038700 Sorghum bicolor Sb01g038700 I 0.768
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.768
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.768
MDP0000125082 Malus x domestica MDP0000125082 I 0.754
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.754
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.754
MDP0000308970 Malus x domestica MDP0000308970 I 0.754
Glyma16g01780.1 Glycine max Glyma16g01780.1 N 0.746
Glyma07g05250.1 Glycine max Glyma07g05250.1 N 0.743
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.739