CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCU02736
(
Neurospora crassa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
NCU02736
T45199_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCU02736T0
RRM
4
74
LFVGGLSWNTDDNMLRAKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYGNDADAENAIANMDGQEFDGRRVR
NCU02736T1
RRM
4
74
LFVGGLSWNTDDNMLRAKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYGNDADAENAIANMDGQEFDGRRVR
Links
Other
RRM
family RBPs
Other
Neurospora crassa
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.2.727.1
Neurospora discreta
gw1.2.727.1
N
0.930
SNOG_04431
Stagonospora nodorum
SNOG_04431
N
0.732
estExt_fgenesh5_pg.C_40456
Trichoderma reesei
estExt_fgenesh5_pg.C_40456
N
0.732
FGSG_00442
Fusarium graminearum
FGSG_00442
N
0.718
PTRG_07976
Pyrenophora tritici repentis
PTRG_07976
N
0.718
GLRG_03991
Colletotrichum graminicola
GLRG_03991
N
0.718
GSTUMT00008723001
Tuber melanosporum
GSTUMT00008723001
N
0.718
estExt_Genewise1Plus.C_70764
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_70764
N
0.718
estExt_Genewise1Plus.C_31070
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_31070
N
0.704
estExt_Genewise1Plus.C_12858
Trichoderma atroviride
estExt_Genewise1Plus.C_12858
N
0.704
FVEG_00902
Fusarium verticillioides
FVEG_00902
N
0.704
FOXG_00610
Fusarium oxysporum
FOXG_00610
N
0.704
Pc06g01290
Penicillium chrysogenum
Pc06g01290
N
0.704
AB02963.1
Alternaria brassicicola
AB02963.1
N
0.704
Pa_1_13615
Podospora anserina
Pa_1_13615
N
0.704