CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM596900
(
Pediculus humanus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PHUM596900
T45395_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM596900-PA
RRM
35
104
LFVGRLSWETTDKELREHFSQFGEIESVSVKTDPASGRSRGFAFIVFKDVESIEKVMAAGDHIINCKKID
PHUM596900-PA
RRM
115
184
IFVGGLDVETSEEDIRNFFGQFGTILEVELPFDKQKNQQKNFCFITFESEQVTNDLLKQPKQTINGKEVD
Links
Other
RRM
family RBPs
Other
Pediculus humanus
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIBMGA013464
Bombyx mori
BGIBMGA013464
N
0.771
amel4_ncbi_hmm2459
Apis mellifera
amel4_ncbi_hmm2459
N
0.757
AAEL005515
Aedes aegypti
AAEL005515
N
0.750
nasonia_NCBI_hmm138813
Nasonia vitripennis
nasonia_NCBI_hmm138813
N
0.736
AGAP006668
Anopheles gambiae
AGAP006668
N
0.736
CpipJ_CPIJ011536
Culex pipiens
CpipJ_CPIJ011536
N
0.729
AGAP000399
Anopheles gambiae
AGAP000399
N
0.729
CPIJ011536
Culex quinquefasciatus
CPIJ011536
N
0.729
GG17035
Drosophila erecta
FBgn0109263
N
0.714
GM25920
Drosophila sechellia
FBgn0180776
N
0.714
sqd
Drosophila melanogaster
FBgn0086897
N
0.714
GA14206-RA
Drosophila pseudoobscura
FBgn0074235
N
0.714
GJ23113
Drosophila virilis
FBgn0210215
N
0.707
GF17370
Drosophila ananassae
FBgn0094388
N
0.707
GD20486
Drosophila simulans
FBgn0191957
N
0.707
GE24428
Drosophila yakuba
FBgn0241545
N
0.700
GK13337
Drosophila willistoni
FBgn0215346
N
0.700
GI10695
Drosophila mojavensis
FBgn0133459
N
0.700
GH19060
Drosophila grimshawi
FBgn0126527
N
0.700