fgenesh1_pm.C_scaffold_6000172 (Pleurotus ostreatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_6000172 T56604_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM8A
M054_0.6 		Homo sapiens RYGCGCB RNAcompete
Ray et al.(2013)
RNCMPT00056 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_6000172 RRM 46 116

Links

Other RRM family RBPs
Other Pleurotus ostreatus RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh2_kg.C_130331 Serpula lacrymans estExt_fgenesh2_kg.C_130331 I 0.958
gww1.22.130.1 Laccaria bicolor gww1.22.130.1 I 0.958
e_gw1.6.577.1 Heterobasidion annosum e_gw1.6.577.1 N 0.944
estExt_fgenesh2_kg.C_60460 Agaricus bisporus estExt_fgenesh2_kg.C_60460 I 0.930
CC1G_08323 Coprinopsis cinerea CC1G_08323 N 0.901
fgenesh1_kg.C_scaffold_4000104 Schizophyllum commune fgenesh1_kg.C_scaffold_4000104 I 0.887
e_gww2.3.582.1 Phanerochaete chrysosporium e_gww2.3.582.1 N 0.887
estExt_Genewise1.C_40022 Postia placenta estExt_Genewise1.C_40022 N 0.887
SPPG_02323 Spizellomyces punctatus SPPG_02323 I 0.775
NCU03226 Neurospora crassa NCU03226 N 0.761
rbm8a Danio rerio ENSDARG00000016516 I 0.761
estExt_Genewise1.C_70784 Neurospora discreta estExt_Genewise1.C_70784 N 0.761
SS1G_12129 Sclerotinia sclerotiorum SS1G_12129 N 0.761
BC1G_11068 Botrytis cinerea BC1G_11068 N 0.761
estExt_Genewise1Plus.C_50393 Neurospora tetrasperma estExt_Genewise1Plus.C_50393 N 0.761
gwEuk.6.623.1 Ostreococcus lucimarinus gwEuk.6.623.1 N 0.761
fgenesh1_pg.sca_1_chr1_3_0001239 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0001239 N 0.732
CHGG_01938 Chaetomium globosum CHGG_01938 N 0.732
estExt_fgenesh2_kg.C_40317 Thielavia terrestris estExt_fgenesh2_kg.C_40317 N 0.732
estExt_Genewise1Plus.C_110234 Trichoderma atroviride estExt_Genewise1Plus.C_110234 N 0.718
e_gw.589.3.1 Branchiostoma floridae e_gw.589.3.1 I 0.718
estExt_fgenesh1_pg.C_20037 Myceliophthora thermophila estExt_fgenesh1_pg.C_20037 N 0.718
ENSPCAG00000002146 Procavia capensis ENSPCAG00000002146 I 0.718
estExt_fgenesh2_pg.C_4600002 Branchiostoma floridae estExt_fgenesh2_pg.C_4600002 I 0.718
gw1.23.298.1 Trichoderma reesei gw1.23.298.1 N 0.718
PABG_01051 Paracoccidioides brasiliensis PABG_01051 N 0.718
CIMG_04543 Coccidioides immitis CIMG_04543 N 0.718
BDBG_04679 Blastomyces dermatitidis BDBG_04679 N 0.718
CPSG_06388 Coccidioides posadasii CPSG_06388 N 0.718
estExt_fgenesh1_kg.C_130003 Mycosphaerella fijiensis estExt_fgenesh1_kg.C_130003 N 0.704
e_gw1.5.731.1 Sporobolomyces roseus e_gw1.5.731.1 N 0.704
Ppa-rnp-4 Pristionchus pacificus PPA11325 N 0.704
e_gw1.136.78.1 Physcomitrella patens e_gw1.136.78.1 N 0.704
estExt_fgenesh1_kg.C_20142 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_20142 N 0.704
estExt_fgenesh1_kg.C_chr_10019 Mycosphaerella graminicola estExt_fgenesh1_kg.C_chr_10019 N 0.704
gw1.3.1887.1 Trichoderma virens gw1.3.1887.1 N 0.704
RBM8A Tursiops truncatus ENSTTRG00000009081 I 0.704
estExt_fgeneshTA2_pg.C_30296 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_30296 N 0.704
EAT91924.1 Phaeosphaeria nodorum EAT91924.1 N 0.704
e_gw1.4.2145.1 Cryphonectria parasitica e_gw1.4.2145.1 N 0.704
Ame_R013073 Ailuropoda melanoleuca Ame_R013073 I 0.704
EuGene.0600010284 Ostreococcus RCC809 EuGene.0600010284 N 0.704
Rbm8a Rattus norvegicus ENSRNOG00000021215 I 0.704
ENSETEG00000017932 Echinops telfairi ENSETEG00000017932 I 0.704
Q6DTK7_HORSE Equus caballus ENSECAG00000022024 I 0.704
RBM8A Felis catus ENSFCAG00000005412 I 0.704
RBM8A Homo sapiens ENSG00000131795 D 0.704
RBM8A Gorilla gorilla ENSGGOG00000005422 I 0.704
RBM8A Gasterosteus aculeatus ENSGACG00000013157 I 0.704
RBM8A Cavia porcellus ENSCPOG00000022453 I 0.704
LOC100399389 Callithrix jacchus ENSCJAG00000002209 I 0.704
MGG_03740 Magnaporthe oryzae MGG_03740 N 0.704
GLRG_00505 Colletotrichum graminicola GLRG_00505 N 0.704
SNOG_00429 Stagonospora nodorum SNOG_00429 N 0.704
AFLA_092480 Aspergillus flavus CADAFLAG00008933 N 0.704
RBM8A Canis familiaris ENSCAFG00000023172 I 0.704
RBM8A_BOVIN Bos taurus ENSBTAG00000008369 I 0.704
ENSLAFG00000021886 Loxodonta africana ENSLAFG00000021886 I 0.704
RBM8A Macaca mulatta ENSMMUG00000016051 I 0.704
RBM8A Sorex araneus ENSSARG00000013289 I 0.704
Pa_1_1890 Podospora anserina Pa_1_1890 N 0.704
RBM8A Sus scrofa ENSSSCG00000006684 I 0.704
RBM8A Spermophilus tridecemlineatus ENSSTOG00000013917 I 0.704
RBM8A Tetraodon nigroviridis ENSTNIG00000006869 I 0.704
B5FZD1_TAEGU Taeniopygia guttata ENSTGUG00000004447 I 0.704
RBM8A Pteropus vampyrus ENSPVAG00000014471 I 0.704
RBM8A Pan troglodytes ENSPTRG00000001201 I 0.704
B020018G12Rik Mus musculus ENSMUSG00000078184 I 0.704
Rbm8a Mus musculus ENSMUSG00000038374 I 0.704
RBM8A Oryctolagus cuniculus ENSOCUG00000025693 I 0.704
RBM8A Otolemur garnettii ENSOGAG00000000202 I 0.704
ENSPPYG00000000929 Pongo pygmaeus ENSPPYG00000000929 I 0.704
Q8JJC6_ORYLA Oryzias latipes ENSORLG00000016263 I 0.704
RBM8A Takifugu rubripes ENSTRUG00000013173 I 0.704