estExt_fgenesh2_kg.C_60460 (Agaricus bisporus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_kg.C_60460 T56296_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM8A
M054_0.6 		Homo sapiens RYGCGCB RNAcompete
Ray et al.(2013)
RNCMPT00056 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_kg.C_60460 RRM 63 133

Links

Other RRM family RBPs
Other Agaricus bisporus RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pm.C_scaffold_6000172 Pleurotus ostreatus fgenesh1_pm.C_scaffold_6000172 I 0.930
estExt_fgenesh2_kg.C_130331 Serpula lacrymans estExt_fgenesh2_kg.C_130331 I 0.915
e_gw1.6.577.1 Heterobasidion annosum e_gw1.6.577.1 N 0.915
gww1.22.130.1 Laccaria bicolor gww1.22.130.1 I 0.901
CC1G_08323 Coprinopsis cinerea CC1G_08323 N 0.887
e_gww2.3.582.1 Phanerochaete chrysosporium e_gww2.3.582.1 N 0.873
estExt_Genewise1.C_40022 Postia placenta estExt_Genewise1.C_40022 N 0.859
fgenesh1_kg.C_scaffold_4000104 Schizophyllum commune fgenesh1_kg.C_scaffold_4000104 I 0.845
BC1G_11068 Botrytis cinerea BC1G_11068 N 0.775
SS1G_12129 Sclerotinia sclerotiorum SS1G_12129 N 0.775
estExt_Genewise1Plus.C_50393 Neurospora tetrasperma estExt_Genewise1Plus.C_50393 N 0.761
estExt_Genewise1.C_70784 Neurospora discreta estExt_Genewise1.C_70784 N 0.761
NCU03226 Neurospora crassa NCU03226 N 0.761
gwEuk.6.623.1 Ostreococcus lucimarinus gwEuk.6.623.1 N 0.746
estExt_fgenesh2_kg.C_40317 Thielavia terrestris estExt_fgenesh2_kg.C_40317 N 0.746
SPPG_02323 Spizellomyces punctatus SPPG_02323 I 0.746
estExt_fgenesh1_pg.C_20037 Myceliophthora thermophila estExt_fgenesh1_pg.C_20037 N 0.732
rbm8a Danio rerio ENSDARG00000016516 I 0.732
CHGG_01938 Chaetomium globosum CHGG_01938 N 0.732
B5FZD1_TAEGU Taeniopygia guttata ENSTGUG00000004447 I 0.732
fgenesh1_pg.sca_1_chr1_3_0001239 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0001239 N 0.732
gw1.3.1887.1 Trichoderma virens gw1.3.1887.1 N 0.732
ENSPCAG00000002146 Procavia capensis ENSPCAG00000002146 I 0.718
estExt_fgenesh1_kg.C_130003 Mycosphaerella fijiensis estExt_fgenesh1_kg.C_130003 N 0.718
estExt_fgenesh1_kg.C_20142 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_20142 N 0.718
estExt_Genewise1Plus.C_110234 Trichoderma atroviride estExt_Genewise1Plus.C_110234 N 0.718
AB00849.1 Alternaria brassicicola AB00849.1 N 0.718
estExt_fgenesh1_kg.C_chr_10019 Mycosphaerella graminicola estExt_fgenesh1_kg.C_chr_10019 N 0.718
gw1.23.298.1 Trichoderma reesei gw1.23.298.1 N 0.718
Ppa-rnp-4 Pristionchus pacificus PPA11325 N 0.704
RBM8A Tursiops truncatus ENSTTRG00000009081 I 0.704
Ame_R013073 Ailuropoda melanoleuca Ame_R013073 I 0.704
EAT91924.1 Phaeosphaeria nodorum EAT91924.1 N 0.704
estExt_fgenesh2_pg.C_4600002 Branchiostoma floridae estExt_fgenesh2_pg.C_4600002 I 0.704
e_gw.589.3.1 Branchiostoma floridae e_gw.589.3.1 I 0.704
RBM8A Pan troglodytes ENSPTRG00000001201 I 0.704
LOC100399389 Callithrix jacchus ENSCJAG00000002209 I 0.704
RBM8A Canis familiaris ENSCAFG00000023172 I 0.704
RBM8A Cavia porcellus ENSCPOG00000022453 I 0.704
Q6DTK7_HORSE Equus caballus ENSECAG00000022024 I 0.704
ENSETEG00000017932 Echinops telfairi ENSETEG00000017932 I 0.704
RBM8A_BOVIN Bos taurus ENSBTAG00000008369 I 0.704
PK01699.1 Cannabis sativa PK01699.1 N 0.704
GLRG_00505 Colletotrichum graminicola GLRG_00505 N 0.704
Pa_1_1890 Podospora anserina Pa_1_1890 N 0.704
MGG_03740 Magnaporthe oryzae MGG_03740 N 0.704
PTRG_10763 Pyrenophora tritici repentis PTRG_10763 N 0.704
SNOG_00429 Stagonospora nodorum SNOG_00429 N 0.704
RBM8A Felis catus ENSFCAG00000005412 I 0.704
RBM8A Homo sapiens ENSG00000131795 D 0.704
ENSPPYG00000000929 Pongo pygmaeus ENSPPYG00000000929 I 0.704
Q8JJC6_ORYLA Oryzias latipes ENSORLG00000016263 I 0.704
RBM8A Pteropus vampyrus ENSPVAG00000014471 I 0.704
Rbm8a Rattus norvegicus ENSRNOG00000021215 I 0.704
RBM8A Sorex araneus ENSSARG00000013289 I 0.704
RBM8A Otolemur garnettii ENSOGAG00000000202 I 0.704
RBM8A Oryctolagus cuniculus ENSOCUG00000025693 I 0.704
ENSLAFG00000021886 Loxodonta africana ENSLAFG00000021886 I 0.704
RBM8A Gorilla gorilla ENSGGOG00000005422 I 0.704
RBM8A Macaca mulatta ENSMMUG00000016051 I 0.704
Rbm8a Mus musculus ENSMUSG00000038374 I 0.704
B020018G12Rik Mus musculus ENSMUSG00000078184 I 0.704
RBM8A Sus scrofa ENSSSCG00000006684 I 0.704